Pseudomonas putida B6-2

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida B6-2 is a Gram-negative, rod-shaped bacterium that thrives in soil and wastewater environments. As a heterotroph, it utilizes organic compounds as its energy source, demonstrating versatility in nutrient acquisition. This species is characterized by its facultative anaerobic nature, allowing it to grow in both the presence and absence of oxygen. Pseudomonas putida B6-2 is motile, equipped with flagella that facilitate movement through its habitat. The bacterium has a mesophilic temperature range, indicating optimal growth at moderate temperatures, which aligns with typical environmental conditions found in soil and wastewater. Structurally, Pseudomonas putida B6-2 contains one replicon and is surrounded by two membranes, a characteristic feature of Gram-negative bacteria. This arrangement plays a significant role in its physiology and interactions with the environment. The biotic relationship of Pseudomonas putida B6-2 is classified as free-living, suggesting that it does not rely on a host organism for survival. This independence allows it to play an essential role in nutrient cycling within its ecosystems. Given its adaptability and metabolic capabilities, Pseudomonas putida B6-2 may contribute significantly to bioremediation processes in contaminated environments, effectively breaking down pollutants and enhancing soil health. Its presence in wastewater treatment indicates its potential application in environmental biotechnology, underlining the ecological importance of this bacterium. The accession number for further genetic information is NZ_CP015202.1.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
StrainB6-2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida B6-2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceHeterotroph
PathogenicityNot Available

Genome Summary

Pseudomonas putida B6-2 chromosome, complete genome.

Gene Summary

Adenine Count

1236367 bp

Thymine Count

1215279 bp

Guanine Count

1941870 bp

Cytosine Count

1983755 bp

Genome Length

6377271 bp

Protein-coding Genes

5604 genes

Non-Coding Genes

266 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
autoinducer binding domain-containing proteinKKK_RS22160Not AvailablePositive4881230 - 488193726695.7
methyltransferaseKKK_RS22165Not AvailablePositive4882034 - 488315840538.0
duf2474 domain-containing proteinKKK_RS22170Not AvailableNegative4883264 - 48834195636.21
cytochrome d ubiquinol oxidase subunit iiKKK_RS22175Not AvailableNegative4883429 - 488443637598.3
cytochrome ubiquinol oxidase subunit iKKK_RS22180Not AvailableNegative4884440 - 488587653019.8
mfs transporterKKK_RS22185Not AvailablePositive4886220 - 488744043082.3
ncs2 family permeaseKKK_RS22190Not AvailablePositive4887669 - 488896444784.2
trna (uridine(54)-c5)-methyltransferase trmaKKK_RS22195Not AvailablePositive4888961 - 489004640898.8
protocatechuate 3,4-dioxygenase subunit alphaKKK_RS22200Not AvailableNegative4890234 - 489083922335.2
protocatechuate 3,4-dioxygenase subunit betaKKK_RS22205Not AvailableNegative4890850 - 489156926851.1

Displaying genes 4531 – 4540 of 5870 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.