Photobacterium marinum str. AK15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium marinum str. AK15 is a marine bacterium characterized by the presence of flagella, which suggests a capacity for motility in aquatic environments. This trait is significant as it may facilitate the organism's ability to navigate through its habitat, potentially influencing its ecological interactions and survival strategies. Genomically, Photobacterium marinum str. AK15 has one replicon, indicating a streamlined genetic structure that may contribute to its adaptability in marine ecosystems. The genome of this strain is accessible under the accession number AMZO00000000.1, providing a resource for further research and characterization of its genetic and functional capabilities. The presence of flagella not only supports motility but may also play a role in the organism's ecological interactions, such as the ability to colonize surfaces or evade predation. Understanding the motility mechanisms of Photobacterium marinum str. AK15 can provide insights into its behavior, ecological niche, and potential applications in biotechnology or environmental monitoring. In summary, the motility conferred by flagella and the simplified genomic structure of Photobacterium marinum str. AK15 are critical traits that inform its ecological role in marine environments. These characteristics may enhance its adaptability and interactions within the microbial community, highlighting the importance of motility in shaping ecological dynamics in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium marinum
StrainAK15

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium marinum strain AK15 contig83, whole genome shotgun

Gene Summary

Adenine Count

1479072 bp

Thymine Count

1497800 bp

Guanine Count

1296943 bp

Cytosine Count

1263147 bp

Genome Length

5536962 bp

Protein-coding Genes

4853 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna topoisomerase iC942_04089Not AvailablePositive5472637 - 547319420658.8
phosphoribosylaminoimidazole carboxylase atpase subunitC942_04090Not AvailableNegative5473264 - 547437940251.4
phosphoribosylaminoimidazole carboxylase catalytic subunitC942_04091Not AvailableNegative5474379 - 547487016991.6
yrdc/sua5 family proteinC942_04092Not AvailablePositive5475073 - 547563020231.3
coproporphyrinogen iii oxidase, aerobicC942_04093Not AvailablePositive5475638 - 547654334776.5
shikimate 5-dehydrogenase i alphaC942_04094Not AvailablePositive5476637 - 547745829467.4
hypothetical proteinC942_04095Not AvailablePositive5477461 - 54777249982.55
carbonic anhydrase, family 3C942_04096Not AvailableNegative5477730 - 547827219172.2
transposaseC942_04097Not AvailableNegative5478733 - 54789758909.77
hypothetical proteinC942_04098Not AvailableNegative5479340 - 54794745086.41

Displaying genes 4911 – 4920 of 4972 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.