Photobacterium marinum str. AK15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium marinum str. AK15 is a marine bacterium characterized by the presence of flagella, which suggests a capacity for motility in aquatic environments. This trait is significant as it may facilitate the organism's ability to navigate through its habitat, potentially influencing its ecological interactions and survival strategies. Genomically, Photobacterium marinum str. AK15 has one replicon, indicating a streamlined genetic structure that may contribute to its adaptability in marine ecosystems. The genome of this strain is accessible under the accession number AMZO00000000.1, providing a resource for further research and characterization of its genetic and functional capabilities. The presence of flagella not only supports motility but may also play a role in the organism's ecological interactions, such as the ability to colonize surfaces or evade predation. Understanding the motility mechanisms of Photobacterium marinum str. AK15 can provide insights into its behavior, ecological niche, and potential applications in biotechnology or environmental monitoring. In summary, the motility conferred by flagella and the simplified genomic structure of Photobacterium marinum str. AK15 are critical traits that inform its ecological role in marine environments. These characteristics may enhance its adaptability and interactions within the microbial community, highlighting the importance of motility in shaping ecological dynamics in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium marinum
StrainAK15

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium marinum strain AK15 contig83, whole genome shotgun

Gene Summary

Adenine Count

1479072 bp

Thymine Count

1497800 bp

Guanine Count

1296943 bp

Cytosine Count

1263147 bp

Genome Length

5536962 bp

Protein-coding Genes

4853 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hydrogenase metallocenter (nife) assembly protein hypfC942_03206Not AvailableNegative4589222 - 459161888544.7
hupe-urej family metal transporterC942_03207Not AvailableNegative4591635 - 459221319947.5
formate dehydrogenase chain dC942_03208Not AvailableNegative4592248 - 459308430728.3
formate hydrogenlyase transcriptional activatorC942_03209Not AvailableNegative4593161 - 459521877482.6
electron transport protein hydnC942_03211Not AvailableNegative4597608 - 459809017218.0
hypothetical proteinC942_03212Not AvailablePositive4598079 - 45982707027.43
coenzyme hydrogenase maturation proteaseC942_03213Not AvailableNegative4598382 - 459884016498.0
formate hydrogenlyase maturation protein hychC942_03214Not AvailableNegative4598837 - 459937619985.6
formate hydrogenlyase subunit 7C942_03215Not AvailableNegative4599366 - 460017529173.2
formate hydrogenlyase complex 3 iron-sulfur proteinC942_03216Not AvailableNegative4600172 - 460072020568.5

Displaying genes 4131 – 4140 of 4972 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.