Photobacterium marinum str. AK15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium marinum str. AK15 is a marine bacterium characterized by the presence of flagella, which suggests a capacity for motility in aquatic environments. This trait is significant as it may facilitate the organism's ability to navigate through its habitat, potentially influencing its ecological interactions and survival strategies. Genomically, Photobacterium marinum str. AK15 has one replicon, indicating a streamlined genetic structure that may contribute to its adaptability in marine ecosystems. The genome of this strain is accessible under the accession number AMZO00000000.1, providing a resource for further research and characterization of its genetic and functional capabilities. The presence of flagella not only supports motility but may also play a role in the organism's ecological interactions, such as the ability to colonize surfaces or evade predation. Understanding the motility mechanisms of Photobacterium marinum str. AK15 can provide insights into its behavior, ecological niche, and potential applications in biotechnology or environmental monitoring. In summary, the motility conferred by flagella and the simplified genomic structure of Photobacterium marinum str. AK15 are critical traits that inform its ecological role in marine environments. These characteristics may enhance its adaptability and interactions within the microbial community, highlighting the importance of motility in shaping ecological dynamics in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium marinum
StrainAK15

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium marinum strain AK15 contig83, whole genome shotgun

Gene Summary

Adenine Count

1479072 bp

Thymine Count

1497800 bp

Guanine Count

1296943 bp

Cytosine Count

1263147 bp

Genome Length

5536962 bp

Protein-coding Genes

4853 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribosomal large subunit pseudouridine synthase aC942_02238Not AvailableNegative3706352 - 370707127317.4
rna polymerase associated protein rapaC942_02239Not AvailableNegative3707216 - 3710134109845.0
putative atpaseC942_02240Not AvailablePositive3710443 - 371181951464.5
thiamin abc transporter, atpase componentC942_02241Not AvailableNegative3711876 - 371260126589.3
thiamin abc transporter, transmembrane componentC942_02242Not AvailableNegative3712601 - 371419058007.9
thiamin abc transporter, substrate-binding componentC942_02243Not AvailableNegative3714204 - 371518736320.1
hypothetical proteinC942_02244Not AvailableNegative3715544 - 371633230492.2
3-isopropylmalate dehydratase small subunitC942_02245Not AvailableNegative3716571 - 371717322567.6
3-isopropylmalate dehydratase large subunitC942_02246Not AvailableNegative3717186 - 371862551527.7
3-isopropylmalate dehydrogenaseC942_02247Not AvailableNegative3718649 - 371973739351.0

Displaying genes 3311 – 3320 of 4972 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.