Photobacterium marinum str. AK15

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Photobacterium

Description

Photobacterium marinum str. AK15 is a marine bacterium characterized by the presence of flagella, which suggests a capacity for motility in aquatic environments. This trait is significant as it may facilitate the organism's ability to navigate through its habitat, potentially influencing its ecological interactions and survival strategies. Genomically, Photobacterium marinum str. AK15 has one replicon, indicating a streamlined genetic structure that may contribute to its adaptability in marine ecosystems. The genome of this strain is accessible under the accession number AMZO00000000.1, providing a resource for further research and characterization of its genetic and functional capabilities. The presence of flagella not only supports motility but may also play a role in the organism's ecological interactions, such as the ability to colonize surfaces or evade predation. Understanding the motility mechanisms of Photobacterium marinum str. AK15 can provide insights into its behavior, ecological niche, and potential applications in biotechnology or environmental monitoring. In summary, the motility conferred by flagella and the simplified genomic structure of Photobacterium marinum str. AK15 are critical traits that inform its ecological role in marine environments. These characteristics may enhance its adaptability and interactions within the microbial community, highlighting the importance of motility in shaping ecological dynamics in aquatic ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusPhotobacterium
SpeciesPhotobacterium marinum
StrainAK15

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Photobacterium marinum strain AK15 contig83, whole genome shotgun

Gene Summary

Adenine Count

1479072 bp

Thymine Count

1497800 bp

Guanine Count

1296943 bp

Cytosine Count

1263147 bp

Genome Length

5536962 bp

Protein-coding Genes

4853 genes

Non-Coding Genes

119 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cytochrome c heme lyase subunit ccmhC942_01648Not AvailableNegative3055907 - 305711844611.6
cytochrome c heme lyase subunit ccmlC942_01649Not AvailableNegative3057118 - 305762118674.7
cytochrome c-type biogenesis protein ccmg/dsbe, thiol:disulfide oxidoreductaseC942_01650Not AvailableNegative3057618 - 305817220698.3
cytochrome c heme lyase subunit ccmfC942_01651Not AvailableNegative3058172 - 306015172725.0
cytochrome c-type biogenesis protein ccme, heme chaperoneC942_01652Not AvailableNegative3060148 - 306063317606.4
cytochrome c-type biogenesis protein ccmd, interacts with ccmceC942_01653Not AvailableNegative3060630 - 30608367835.58
cytochrome c-type biogenesis protein ccmc, putative heme lyase for ccmeC942_01654Not AvailableNegative3060844 - 306157527250.9
abc transporter involved in cytochrome c biogenesis, ccmb subunitC942_01655Not AvailableNegative3061618 - 306228623821.5
abc transporter involved in cytochrome c biogenesis, atpase component ccmaC942_01656Not AvailableNegative3062293 - 306294324055.8
hypothetical proteinC942_01657Not AvailablePositive3063334 - 306391221414.7

Displaying genes 2721 – 2730 of 4972 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.