Vibrio tubiashii ATCC 19109

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio tubiashii ATCC 19109 is characterized by its possession of six replicons, which indicates a complex genomic structure potentially contributing to its adaptability and survival in various environments. The organism is cataloged under multiple accessions, specifically NZ_CP009354.1, NZ_CP009355.1, NZ_CP009356.1, NZ_CP009357.1, NZ_CP009358.1, and NZ_CP009359.1. These accessions correspond to distinct segments of its genome, reflecting the genetic diversity and complexity within the species. As a member of the Vibrio genus, V. tubiashii is known to inhabit marine environments, where it plays a role in the ecological balance of aquatic ecosystems. Its genetic makeup, as indicated by the presence of multiple replicons, may allow for the horizontal gene transfer of traits that enhance its fitness in fluctuating marine conditions. This adaptability can include resistance to environmental stressors, which is crucial for survival in the diverse habitats it occupies. Understanding the genomic structure of V. tubiashii can provide insights into its ecological roles, particularly its interactions within marine food webs and its potential impacts on aquaculture. The complexity of its genome positions it as a subject of interest for further research in microbial ecology and evolutionary biology, particularly regarding how such traits influence the organism's behavior and interactions within its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio tubiashii
StrainATCC 19109

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio tubiashii ATCC 19109
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio tubiashii ATCC 19109 chromosome 2, complete sequence.

Gene Summary

Adenine Count

490567 bp

Thymine Count

489572 bp

Guanine Count

393676 bp

Cytosine Count

392767 bp

Genome Length

1766582 bp

Protein-coding Genes

1613 genes

Non-Coding Genes

8 genes

# of Chromosomes/Plasmids

6

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type iii secretion system gatekeeper subunit sctwIX91_RS09005Not AvailableNegative1995629 - 199652533304.2
type iii secretion system atpase sctnIX91_RS09010Not AvailablePositive1996716 - 199803848020.9
type iii secretion system stalk subunit sctoIX91_RS09015Not AvailablePositive1998035 - 199849618177.8
type iii secretion system needle length determinantIX91_RS09020Not AvailablePositive1998505 - 199964142256.0
type iii secretion system cytoplasmic ring protein sctqIX91_RS09025Not AvailablePositive1999641 - 200060035674.0
sctr family type iii secretion system export apparatus subunit vscrIX91_RS09030Not AvailablePositive2000602 - 200125224085.2
type iii secretion system export apparatus subunit sctsIX91_RS09035Not AvailablePositive2001267 - 20015339598.14
type iii secretion system export apparatus subunit scttIX91_RS09040Not AvailablePositive2001530 - 200232129429.9
type iii secretion system export apparatus subunit sctuIX91_RS09045Not AvailablePositive2002331 - 200338638992.2
hypothetical proteinIX91_RS09050Not AvailableNegative2003441 - 200491652881.4

Displaying genes 3491 – 3500 of 5142 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.