[Propionibacterium] namnetense SK182B-JCVI

Gram-positiveRod

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Propionibacteriaceae

Genus

Cutibacterium

Description

Propionibacterium namnetense SK182B-JCVI is a Gram-positive bacterium characterized by its rod shape and the presence of flagella. This organism has a single replicon, which is indicative of its genomic structure. Its accession number is AFUN00000000.1, providing a reference point for genomic studies and further research. The presence of flagella in P. namnetense SK182B-JCVI suggests that it is motile, which may play a role in its ecological interactions and ability to colonize various environments. The motility could facilitate its movement towards favorable conditions or resources, which is a common trait among many bacteria that allows them to thrive in competitive ecosystems. As a member of the Propionibacterium genus, P. namnetense SK182B-JCVI is likely to be involved in various biological processes, including fermentation. While specific metabolic pathways or ecological roles are not detailed in the available evidence, the attributes of Gram-positive bacteria and their common habitats in various environments suggest that this organism may contribute to nutrient cycling or microbial community dynamics. Overall, P. namnetense SK182B-JCVI exemplifies the diversity of microbial life and highlights the potential ecological roles that such bacteria can play in their respective environments, particularly through their motility and interactions with other microorganisms.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyPropionibacteriaceae
GenusCutibacterium
SpeciesCutibacterium namnetense
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of [Propionibacterium] namnetense SK182B-JCVI
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

[Propionibacterium] namnetense SK182B-JCVI ctg1123499743331, whole

Gene Summary

Adenine Count

482823 bp

Thymine Count

484469 bp

Guanine Count

729914 bp

Cytosine Count

733419 bp

Genome Length

2430672 bp

Protein-coding Genes

2282 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ump kinaseHMPREF1162_0875Not AvailablePositive13139 - 1385225566.6
ribosome recycling factorHMPREF1162_0876Not AvailablePositive13885 - 1443920975.1
phosphatidate cytidylyltransferaseHMPREF1162_0877Not AvailablePositive14451 - 1531429917.3
hypothetical proteinHMPREF1162_0878Not AvailablePositive15410 - 155715757.65
disulfide bond formation protein dsbbHMPREF1162_0879Not AvailablePositive15655 - 1622120597.0
23s rrna m2a2503 methyltransferaseHMPREF1162_0880Not AvailablePositive16285 - 1750244218.1
glu/leu/phe/val dehydrogenase, dimerization domain proteinHMPREF1162_0882Not AvailablePositive17582 - 1891948088.8
putative lysine decarboxylaseHMPREF1162_0881Not AvailableNegative18897 - 1998839145.4
beta-lactamaseHMPREF1162_0883Not AvailableNegative19985 - 2135849808.2
1-deoxy-d-xylulose 5-phosphate reductoisomeraseHMPREF1162_0884Not AvailablePositive21455 - 2267842399.4

Displaying genes 21 – 30 of 2339 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

42 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00019773,4-dihydroxybenzoateC7H5O4Chemical structure of 3,4-dihydroxybenzoateNot available
Average153.114Da
Monoisotopic153.019332221Da
BASm0002232(2E,4Z)-5-hydroxypenta-2,4-diene-1,2,5-tricarboxylateC8H5O7Chemical structure of (2E,4Z)-5-hydroxypenta-2,4-diene-1,2,5-tricarboxylateNot available
Average213.123Da
Monoisotopic213.005173241Da
BASm0002319Cu(+)CuChemical structure of Cu(+)7440-50-8
Average63.546Da
Monoisotopic62.92960108Da
BASm00027107,8-dihydrofolateC19H19N7O6Chemical structure of 7,8-dihydrofolateNot available
Average441.405Da
Monoisotopic441.1407785Da

Displaying 1–10 of 42 metabolites

Health Effects

No health effects information available for this bacterium.