Agrobacterium tumefaciens F2

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens F2 is a Gram-negative, aerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This species thrives in various habitats, indicating its adaptability to different environmental conditions. The optimal growth temperature for A. tumefaciens F2 is 25°C, and it falls within the mesophilic temperature range, suggesting that it prefers moderate temperatures for optimal metabolic activity. A. tumefaciens F2 is notable for having three replicons and two membranes, which is characteristic of many Gram-negative bacteria. This structural feature may contribute to its ability to interact with host plants, as it is known for its role in plant tumor formation through the transfer of genetic material. The bacterium exists as a free-living organism, indicating that it does not rely on a host for survival, which may allow it to establish itself in diverse environments. The presence of multiple accessions, such as AFSD00000000.1, NZ_AFSD01000007.1, and NZ_AFSD01000008.1, suggests genetic diversity within A. tumefaciens F2, which could provide insights into its ecological interactions and adaptability. This genetic variability may enhance its capability to respond to environmental changes or to establish biotic relationships with various plants, thereby influencing plant health and ecosystem dynamics. Understanding A. tumefaciens F2's traits and behaviors can shed light on its ecological role and potential applications in biotechnology, particularly in plant genetic engineering.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainF2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens F2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens F2 plasmid unnamed p1, whole genome

Gene Summary

Adenine Count

22659 bp

Thymine Count

22819 bp

Guanine Count

29208 bp

Cytosine Count

30379 bp

Genome Length

105065 bp

Protein-coding Genes

119 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-dehydroquinate dehydrataseAgau_L101674Not AvailableNegative4085813 - 408625616217.3
shikimate 5-dehydrogenaseAgau_L101676Not AvailableNegative4086253 - 408712231179.5
abc transporter, nucleotide binding/atpase protein (amino acid)Agau_L101677Not AvailableNegative4087284 - 408804527992.0
abc transporter, substrate binding protein (amino acid)Agau_L101679Not AvailableNegative4088059 - 408889829797.7
abc transporter, membrane spanning protein (amino acid)Agau_L101680Not AvailableNegative4088941 - 408959123068.7
abc transporter, membrane spanning protein (amino acid)Agau_L101682Not AvailableNegative4089602 - 409027024113.3
3-carboxy-cis,cis-muconate lactonizing enzymeAgau_L101685Not AvailableNegative4090635 - 409169637440.9
protocatechuate 3,4-dioxygenase type i alpha subunit pcag-iAgau_L101687Not AvailableNegative4091715 - 409233522851.9
protocatechuate 3,4-dioxygenase type i beta subunit pcah-iAgau_L101689Not AvailableNegative4092338 - 409307827825.4
carboxymuconolactone decarboxylaseAgau_L101691Not AvailableNegative4093075 - 409350915664.4

Displaying genes 4541 – 4550 of 5873 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.