Agrobacterium tumefaciens F2

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens F2 is a Gram-negative, aerobic bacterium characterized by its rod shape and mobility, facilitated by the presence of flagella. This species thrives in various habitats, indicating its adaptability to different environmental conditions. The optimal growth temperature for A. tumefaciens F2 is 25°C, and it falls within the mesophilic temperature range, suggesting that it prefers moderate temperatures for optimal metabolic activity. A. tumefaciens F2 is notable for having three replicons and two membranes, which is characteristic of many Gram-negative bacteria. This structural feature may contribute to its ability to interact with host plants, as it is known for its role in plant tumor formation through the transfer of genetic material. The bacterium exists as a free-living organism, indicating that it does not rely on a host for survival, which may allow it to establish itself in diverse environments. The presence of multiple accessions, such as AFSD00000000.1, NZ_AFSD01000007.1, and NZ_AFSD01000008.1, suggests genetic diversity within A. tumefaciens F2, which could provide insights into its ecological interactions and adaptability. This genetic variability may enhance its capability to respond to environmental changes or to establish biotic relationships with various plants, thereby influencing plant health and ecosystem dynamics. Understanding A. tumefaciens F2's traits and behaviors can shed light on its ecological role and potential applications in biotechnology, particularly in plant genetic engineering.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
StrainF2

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens F2
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens F2 plasmid unnamed p1, whole genome

Gene Summary

Adenine Count

22659 bp

Thymine Count

22819 bp

Guanine Count

29208 bp

Cytosine Count

30379 bp

Genome Length

105065 bp

Protein-coding Genes

119 genes

Non-Coding Genes

1 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
amino acid abc transporter atp-binding proteinAGAU_RS24870Not AvailableNegative230486 - 23127428987.6
amino acid abc transporter permeaseAGAU_RS24875Not AvailableNegative231271 - 23219133395.7
abc transporter substrate-binding proteinAGAU_RS24880Not AvailableNegative232283 - 23312830211.0
laci family dna-binding transcriptional regulatorAGAU_RS24885Not AvailablePositive233389 - 23447738768.8
pfkb family carbohydrate kinaseAGAU_RS24890Not AvailablePositive234716 - 23560331555.4
type ii toxin-antitoxin system hipa family toxinAGAU_RS24895Not AvailableNegative235739 - 23700145753.3
helix-turn-helix domain-containing proteinAGAU_RS24900Not AvailableNegative236998 - 2372258220.28
hnh endonucleaseAGAU_RS24905Not AvailableNegative237373 - 23828433778.2
hypothetical proteinAGAU_RS24910Not AvailablePositive238440 - 24078889488.5
aaa family atpaseAGAU_RS24915Not AvailablePositive241331 - 24241339452.2

Displaying genes 331 – 340 of 5873 in total

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.