Escherichia coli UMNF18

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli UMNF18 is a Gram-negative bacterium characterized by its rod-shaped morphology and its capacity for mobility, facilitated by the presence of flagella. This organism is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. The optimal growth temperature for UMNF18 is 37°C, which positions it within the mesophilic temperature range, suitable for growth in warm-blooded hosts. UMNF18 typically exists in pairs or singles, exhibiting a free-living biotic relationship. This bacterium is associated with host environments, suggesting its potential role in the microbiome of various organisms. Notably, it possesses a complex genomic structure with seven replicons, indicating a degree of genetic diversity that could contribute to its adaptability in various ecological niches. The presence of two membranes is characteristic of Gram-negative bacteria and contributes to its structural integrity and interaction with the environment. These traits may facilitate its survival and adaptability in host-associated habitats. The ecological insight from these traits highlights the versatility of E. coli UMNF18 as a free-living organism that can efficiently utilize available resources in host-associated environments, potentially playing a role in nutrient cycling and symbiotic relationships within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainUMNF18

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli UMNF18
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli UMNF18 plasmid pUMNF18_32, whole genome shotgun

Gene Summary

Adenine Count

1393674 bp

Thymine Count

1388949 bp

Guanine Count

1428741 bp

Cytosine Count

1423941 bp

Genome Length

5635305 bp

Protein-coding Genes

4919 genes

Non-Coding Genes

871 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
allantoin transporterUMNF18_RS23695P75712Positive516185 - 51763952459.2
allantoinase allbUMNF18_RS23690C4ZUW1Positive517699 - 51906049604.4
uracil/xanthine transporterUMNF18_RS23685P77328Positive519117 - 52041847242.2
glycerate 3-kinaseUMNF18_RS23680P77364Positive520440 - 52158538736.9
duf2501 domain-containing protein yjjaUMNF18_RS0126110P75713Negative521813 - 52259828618.9
allantoate deiminaseUMNF18_RS23675P77425Negative522609 - 52384445696.6
ureidoglycolate dehydrogenaseUMNF18_RS23670P77555Negative523866 - 52491537969.3
acyl-coa synthetase fdraUMNF18_RS23665Q47208Positive525232 - 52689958532.3
duf1116 domain-containing proteinUMNF18_RS23660P77129Positive526909 - 52816844991.6
duf2877 domain-containing proteinUMNF18_RS23655P0AAS6Positive528179 - 52899429620.8

Displaying genes 1391 – 1400 of 11617 in total

Metabolites

326 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 326 metabolites

Health Effects

No health effects information available for this bacterium.