Escherichia coli UMNF18

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli UMNF18 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells and is classified as a facultative anaerobe, allowing it to thrive in both aerobic and anaerobic environments. This strain exhibits optimal growth at 37.0°C, a temperature that corresponds with the physiological conditions of warm-blooded hosts, suggesting a potential adaptation to life within a host-associated habitat. E. coli UMNF18's Gram-negative cell wall structure is characterized by a thin peptidoglycan layer surrounded by an outer membrane, which may confer advantages such as resistance to certain antibiotics and the ability to interact with host immune responses. Its facultative anaerobic metabolism enables it to utilize a variety of substrates for energy production, potentially allowing it to colonize diverse niches within a host organism. The specific ecological role of E. coli UMNF18 remains to be elucidated; however, its presence in host-associated environments indicates it may play a significant role in the microbiota composition and function. Understanding the interactions of this strain within the microbiome may provide insights into its contributions to host health or disease states, highlighting the complex relationships between host organisms and their microbial inhabitants.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
StrainUMNF18

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli UMNF18
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Escherichia coli UMNF18


Gene Summary

Adenine Count

1393674 bp

Thymine Count

1388949 bp

Guanine Count

1428741 bp

Cytosine Count

1423941 bp

Genome Length

5635305 bp

Protein-coding Genes

4919 genes

Non-Coding Genes

871 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+543323 - 543369Not Available
IntegraseUMNF18_RS23575P24218-543383 - 54454645092.5
Hypothetical proteinUMNF18_RS0126120Not Available-544745 - 54502310925.2
Hypothetical proteinUMNF18_RS0126125Not Available-545001 - 5451866902.33
Hypothetical proteinUMNF18_RS0126130Not Available-545159 - 5453206011.55
Putative transposaseUMNF18_RS23570Not Available-545363 - 54657646032.7
Putative exonucleaseUMNF18_RS23560P03697-546651 - 54733125954.1
Recombination protein betUMNF18_RS33690P03698-547328 - 5475257319.76
Host-nuclease inhibitor protein gamUMNF18_RS33695P03702-547523 - 5477087338.62
Kil proteinUMNF18_RS0126135Not Available-547784 - 5479907736.37

Displaying genes 1 – 10 of 11617 in total

Metabolites

326 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 326 metabolites