Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Family
Genus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | /taxonomy?kingdom=Pseudomonadati&klass=Gammaproteobacteria&level=order&phylum=Pseudomonadota |
| Family | /taxonomy?kingdom=Pseudomonadati&klass=Gammaproteobacteria&level=family&phylum=Pseudomonadota |
| Genus | /taxonomy?kingdom=Pseudomonadati&klass=Gammaproteobacteria&level=genus&phylum=Pseudomonadota |
| Species | endosymbiont of Riftia pachyptila |
| Strain | (vent Ph05) |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
721041 bp
Thymine Count
712297 bp
Guanine Count
1021414 bp
Cytosine Count
1026169 bp
Genome Length
3481040 bp
Protein-coding Genes
3182 genes
Non-Coding Genes
46 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | Rifp1Sym_ag00320 | Not Available | Positive | 434872 - 435006 | 4604.64 |
| cold-shock dna-binding domain protein | Rifp1Sym_ag00330 | Not Available | Positive | 435191 - 435415 | 8303.81 |
| rnp-1 like rna-binding protein | Rifp1Sym_ag00340 | Not Available | Positive | 435489 - 435809 | 11618.0 |
| thioesterase superfamily protein | Rifp1Sym_ag00350 | Not Available | Negative | 435992 - 436405 | 15590.6 |
| l-alanine-dl-glutamate epimerase | Rifp1Sym_ag00360 | Not Available | Negative | 436402 - 437478 | 38376.3 |
| 1,4-dihydroxy-2-naphthoate octaprenyltransferase | Rifp1Sym_ag00370 | Not Available | Negative | 437480 - 438343 | 30638.8 |
| naphthoate synthase | Rifp1Sym_ag00380 | Not Available | Negative | 438340 - 439170 | 30293.4 |
| hypothetical protein | Rifp1Sym_ag00390 | Not Available | Negative | 439298 - 440083 | 29211.1 |
| 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase | Rifp1Sym_ag00400 | Not Available | Negative | 440105 - 441802 | 62053.0 |
| menaquinone-specific isochorismate synthase | Rifp1Sym_ag00410 | Not Available | Negative | 441802 - 442578 | 27860.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
