endosymbiont of Riftia pachyptila (vent Ph05)

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Family

Genus

Description

The endosymbiont of Riftia pachyptila, a species of tube worm found at hydrothermal vent ecosystems, is characterized by having a single replicon. This trait is significant as it suggests a streamlined genome organization, which is often indicative of a highly specialized organism adapted to its unique environment. The genomic information for this endosymbiont is cataloged under the accession number AFOC00000000.1. This endosymbiont is crucial for the survival of Riftia pachyptila, as it provides the host with essential nutrients through chemosynthesis. The symbiotic relationship allows the tube worm to thrive in extreme conditions where sunlight is absent, and traditional photosynthesis is not possible. Instead, the endosymbiont utilizes chemicals such as hydrogen sulfide, which are abundant in hydrothermal vent environments, to produce organic molecules that support the growth and metabolism of the host. Understanding the genomic characteristics and functions of the endosymbiont contributes to our knowledge of the evolutionary adaptations of life in extreme environments. This relationship exemplifies the intricate interactions between organisms and their environments, highlighting the importance of chemosynthetic pathways in sustaining life in ecosystems that rely on alternative energy sources. The insights gained can inform broader ecological and evolutionary studies, particularly in the context of symbiosis and energy flow in extreme habitats.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Endosymbiont of Riftia pachyptila (vent Ph05) Rifp1Symhn, whole

Gene Summary

Adenine Count

721041 bp

Thymine Count

712297 bp

Guanine Count

1021414 bp

Cytosine Count

1026169 bp

Genome Length

3481040 bp

Protein-coding Genes

3182 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbonic anhydrase, family 3Rifp1Sym_es00020Not AvailablePositive3184566 - 318510819234.0
shikimate dehydrogenaseRifp1Sym_es00030Not AvailableNegative3185129 - 318594429383.1
delta-aminolevulinic acid dehydrataseRifp1Sym_es00040Not AvailableNegative3185955 - 318696536739.8
thioredoxin domain proteinRifp1Sym_es00050Not AvailablePositive3187042 - 318742514707.5
putative ribosome maturation factor rimnRifp1Sym_es00060Not AvailableNegative3188033 - 318862621293.0
phosphoribosylaminoimidazole carboxylase catalytic subunitRifp1Sym_es00070Not AvailableNegative3188595 - 318910117332.2
extracellular solute-binding protein, family 3Rifp1Sym_es00080Not AvailablePositive3189280 - 319085158912.4
abc-type transport system involved in resistance to tolueneRifp1Sym_es00090Not AvailablePositive3191118 - 319173523933.0
glucose-1-phosphate thymidylyltransferaseRifp1Sym_et00020Not AvailableNegative3192531 - 319340632478.9
dtdp-glucose 4,6-dehydrataseRifp1Sym_et00030Not AvailableNegative3193407 - 319449240729.6

Displaying genes 2981 – 2990 of 3228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.