endosymbiont of Riftia pachyptila (vent Ph05)

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Family

Genus

Description

The endosymbiont of Riftia pachyptila, a species of tube worm found at hydrothermal vent ecosystems, is characterized by having a single replicon. This trait is significant as it suggests a streamlined genome organization, which is often indicative of a highly specialized organism adapted to its unique environment. The genomic information for this endosymbiont is cataloged under the accession number AFOC00000000.1. This endosymbiont is crucial for the survival of Riftia pachyptila, as it provides the host with essential nutrients through chemosynthesis. The symbiotic relationship allows the tube worm to thrive in extreme conditions where sunlight is absent, and traditional photosynthesis is not possible. Instead, the endosymbiont utilizes chemicals such as hydrogen sulfide, which are abundant in hydrothermal vent environments, to produce organic molecules that support the growth and metabolism of the host. Understanding the genomic characteristics and functions of the endosymbiont contributes to our knowledge of the evolutionary adaptations of life in extreme environments. This relationship exemplifies the intricate interactions between organisms and their environments, highlighting the importance of chemosynthetic pathways in sustaining life in ecosystems that rely on alternative energy sources. The insights gained can inform broader ecological and evolutionary studies, particularly in the context of symbiosis and energy flow in extreme habitats.

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Endosymbiont of Riftia pachyptila (vent Ph05) Rifp1Symhn, whole

Gene Summary

Adenine Count

721041 bp

Thymine Count

712297 bp

Guanine Count

1021414 bp

Cytosine Count

1026169 bp

Genome Length

3481040 bp

Protein-coding Genes

3182 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative glycine dehydrogenaseRifp1Sym_ac00530Not AvailableNegative223684 - 22513852373.9
glycine cleavage system h proteinRifp1Sym_ac00540Not AvailableNegative225098 - 22549014073.0
aminomethyltransferaseRifp1Sym_ac00550Not AvailableNegative225534 - 22664340612.1
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylaseRifp1Sym_ac00560Not AvailableNegative227070 - 22828744119.4
2-octaprenyl-6-methoxyphenol hydroxylaseRifp1Sym_ac00570Not AvailableNegative228284 - 22950744436.7
xaa-pro aminopeptidaseRifp1Sym_ac00580Not AvailableNegative229509 - 23084950511.7
yeca family proteinRifp1Sym_ac00590Not AvailableNegative230803 - 23136920789.4
hypothetical proteinRifp1Sym_ac00600Not AvailablePositive231368 - 23170012152.5
hypothetical proteinRifp1Sym_ac00610Not AvailablePositive231697 - 23201111726.2
5-formyltetrahydrofolate cyclo-ligaseRifp1Sym_ac00620Not AvailablePositive232214 - 23284324080.4

Displaying genes 211 – 220 of 3228 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.