Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Family
Genus
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | /taxonomy?kingdom=Pseudomonadati&klass=Gammaproteobacteria&level=order&phylum=Pseudomonadota |
| Family | /taxonomy?kingdom=Pseudomonadati&klass=Gammaproteobacteria&level=family&phylum=Pseudomonadota |
| Genus | /taxonomy?kingdom=Pseudomonadati&klass=Gammaproteobacteria&level=genus&phylum=Pseudomonadota |
| Species | endosymbiont of Riftia pachyptila |
| Strain | (vent Ph05) |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
721041 bp
Thymine Count
712297 bp
Guanine Count
1021414 bp
Cytosine Count
1026169 bp
Genome Length
3481040 bp
Protein-coding Genes
3182 genes
Non-Coding Genes
46 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acyl-coenzyme a dehydrogenase | Rifp1Sym_ax00160 | Not Available | Negative | 1202651 - 1204270 | 58942.1 |
| hypothetical protein | Rifp1Sym_ax00170 | Not Available | Negative | 1204267 - 1205211 | 36059.1 |
| [nife] hydrogenase metallocenter assembly protein | Rifp1Sym_ax00180 | Not Available | Negative | 1205494 - 1206225 | 26429.9 |
| [nife] hydrogenase metallocenter assembly protein | Rifp1Sym_ax00190 | Not Available | Negative | 1206264 - 1206626 | 12891.7 |
| hydrogenase nickel incorporation protein | Rifp1Sym_ax00200 | Not Available | Negative | 1206892 - 1207464 | 20701.2 |
| hydrogenase expression/synthesis protein | Rifp1Sym_ax00210 | Not Available | Negative | 1207540 - 1207896 | 12751.4 |
| hydrogenase assembly chaperone | Rifp1Sym_ax00220 | Not Available | Negative | 1207889 - 1208125 | 8927.78 |
| hydrogenase expression/formation protein hoxm | Rifp1Sym_ax00230 | Not Available | Positive | 1208208 - 1208723 | 18567.4 |
| huph hydrogenase expression protein | Rifp1Sym_ax00240 | Not Available | Positive | 1208810 - 1209250 | 15519.5 |
| uptake hydrogenase small subunit | Rifp1Sym_ax00250 | Not Available | Positive | 1209264 - 1210358 | 38493.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
