Pseudoxanthomonas spadix BD-a59

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Pseudoxanthomonas

Description

Pseudoxanthomonas spadix BD-a59 is a rod-shaped bacterium primarily found in gasoline-contaminated soil. This specific habitat suggests a unique adaptation to environments affected by hydrocarbons, which may be indicative of its metabolic capabilities in degrading petroleum compounds. The organism has a single replicon, suggesting a streamlined genetic organization that may contribute to its efficiency in utilizing available resources in its niche. The bacterium is cataloged under the accession number NC_016147.2, which allows for further genetic and genomic studies. This accession can provide insights into its metabolic pathways and potential applications in bioremediation efforts, particularly in environments contaminated with petroleum products. The ecological significance of Pseudoxanthomonas spadix BD-a59 lies in its potential role in the degradation of toxic compounds in contaminated soils. By thriving in such challenging conditions, it may contribute to the natural attenuation processes that help restore ecological balance in environments disrupted by human activity. Understanding the mechanisms by which this bacterium metabolizes hydrocarbons could be instrumental in developing bioremediation strategies that leverage its capabilities to clean up gasoline-contaminated sites effectively.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusPseudoxanthomonas
SpeciesPseudoxanthomonas spadix
StrainBD-a59

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatgasoline-contaminated soil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoxanthomonas spadix BD-a59


Gene Summary

Adenine Count

555833 bp

Thymine Count

560974 bp

Guanine Count

1167727 bp

Cytosine Count

1168020 bp

Genome Length

3452554 bp

Protein-coding Genes

3138 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipid-a-disaccharide synthase n-terminal domain-containing proteinDSC_RS11145Not AvailablePositive2470820 - 247116112985.9
Trna-valNot AvailableNot AvailablePositive2471451 - 2471525Not Available
excinuclease abc subunit uvrbDSC_RS11155Not AvailableNegative2471639 - 247365776006.7
gsph/fimt family pseudopilinDSC_RS11160Not AvailablePositive2473814 - 247437719954.6
Trna-asnNot AvailableNot AvailablePositive2474470 - 2474546Not Available
gsph/fimt family pseudopilinDSC_RS11170Not AvailablePositive2474802 - 247533518663.4
type iv pilin proteinDSC_RS11175Not AvailableNegative2475491 - 247590114553.5
pilus assembly proteinDSC_RS11180Not AvailableNegative2475922 - 2479527125077.0
pilx n-terminal domain-containing pilus assembly proteinDSC_RS11185Not AvailableNegative2479539 - 248007819063.0
prepilin-type n-terminal cleavage/methylation domain-containing proteinDSC_RS11190Not AvailableNegative2480075 - 248111236128.7

Displaying genes 2291 – 2300 of 3204 in total

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm00011034-chlorobenzoateC7H4ClO2Chemical structure of 4-chlorobenzoateNot available
Average155.56Da
Monoisotopic154.9905306Da
BASm0001861(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2Chemical structure of (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolNot available
Average188.226Da
Monoisotopic188.0837296Da
BASm0001885Tetra-mu3-sulfido-tetrairon(1+)Fe4S4Chemical structure of Tetra-mu3-sulfido-tetrairon(1+)Not available
Average351.62Da
Monoisotopic351.62748Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014038Malic acidC4H6O5Chemical structure of Malic acid97-67-6
Average134.0874Da
Monoisotopic134.021523302Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm00175184-Hydroxy-2-oxopentanoateC5H7O4Chemical structure of 4-Hydroxy-2-oxopentanoate3318-73-8
Average131.108Da
Monoisotopic131.034982285Da

Displaying 1–10 of 14 metabolites

Health Effects

No health effects information available for this bacterium.