Pseudoxanthomonas spadix BD-a59

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Pseudoxanthomonas

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusPseudoxanthomonas
SpeciesPseudoxanthomonas spadix
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudoxanthomonas spadix BD-a59

Accession NumberNC_016147.2

Gene Summary

Adenine Count

555833 bp

Thymine Count

560974 bp

Guanine Count

1167727 bp

Cytosine Count

1168020 bp

Genome Length

3452554 bp

Protein-coding Genes

3138 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
yafy family proteinDSC_RS02425Not Available+555732 - 55671536964.1
nudix family hydrolaseDSC_RS02430Not Available+556855 - 55782934945.1
dephospho-coa kinaseDSC_RS02435Not Available-557805 - 55841621674.2
ncs2 family permeaseDSC_RS02440Not Available+558802 - 56010644575.8
nucleoside hydrolaseDSC_RS02445Not Available+560120 - 56126541450.2
cysteine hydrolase family proteinDSC_RS02450Not Available+561565 - 56214620004.0
hypothetical proteinDSC_RS02455Not Available+562216 - 5624829642.02
pyruvate kinaseDSC_RS02460Not Available+562623 - 56416455843.4
cysteine synthase aDSC_RS02465Not Available-564449 - 56540834467.2
siroheme synthase cysgDSC_RS02470Not Available-565440 - 56689151771.5

Displaying genes 511 – 520 of 3204 in total

Pathways

3 pathways
Biphenyl degradation pathway thumbnail
Biphenyl degradation
Biphenyl degradation
4-Chlorobiphenyl degradation pathway thumbnail
4-Chlorobiphenyl degradation
4-Chlorobiphenyl degradation
TCA Cycle pathway thumbnail
TCA Cycle
TCA Cycle

Metabolites

14 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm00011034-chlorobenzoateC7H4ClO2Chemical structure of 4-chlorobenzoateNot available
Average155.56Da
Monoisotopic154.9905306Da
BASm0001861(2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolC12H12O2Chemical structure of (2R,3S)-3-phenylcyclohexa-3,5-diene-1,2-diolNot available
Average188.226Da
Monoisotopic188.0837296Da
BASm0001885Tetra-mu3-sulfido-tetrairon(1+)Fe4S4Chemical structure of Tetra-mu3-sulfido-tetrairon(1+)Not available
Average351.62Da
Monoisotopic351.62748Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014038Malic acidC4H6O5Chemical structure of Malic acid97-67-6
Average134.0874Da
Monoisotopic134.021523302Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da
BASm0017263NADPC21H29N7O17P3Chemical structure of NADP53-59-8
Average744.4129Da
Monoisotopic744.083277073Da
BASm00175184-Hydroxy-2-oxopentanoateC5H7O4Chemical structure of 4-Hydroxy-2-oxopentanoate3318-73-8
Average131.108Da
Monoisotopic131.034982285Da

Displaying 1–10 of 14 metabolites