Campylobacter ureolyticus RIGS 9880

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Campylobacteraceae

Genus

Campylobacter

Description

Campylobacter ureolyticus RIGS 9880 is characterized by having a single replicon, which indicates a streamlined genomic structure that may contribute to its adaptability in various environments. Its genomic information is accessible under the accession number NZ_CP012195.1, which provides a resource for researchers interested in its genetic makeup and potential applications. C. ureolyticus is a member of the Campylobacter genus, known for its adaptation to diverse ecological niches, including animal intestines and various environments. The single replicon may suggest a reduced genomic complexity, which can be advantageous for survival in specific habitats, reflecting a potential evolutionary strategy to optimize resource use. Understanding the genetic and metabolic traits of C. ureolyticus can provide insights into its ecological role, particularly in nitrogen cycling, as indicated by its ureolytic capabilities. This bacterium's ability to hydrolyze urea may facilitate its survival in environments where nitrogen sources are limited, enhancing its ecological niche and contributing to nutrient cycling processes. In summary, C. ureolyticus RIGS 9880, with its single replicon and specific genetic traits, exemplifies the adaptability of bacteria in ecological systems, particularly in contexts related to nitrogen metabolism and survival in competitive environments.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyCampylobacteraceae
GenusCampylobacter
SpeciesCampylobacter ureolyticus
StrainRIGS 9880

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Campylobacter ureolyticus RIGS 9880
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Campylobacter ureolyticus RIGS 9880


Gene Summary

Adenine Count

584343 bp

Thymine Count

577595 bp

Guanine Count

241327 bp

Cytosine Count

238622 bp

Genome Length

1641887 bp

Protein-coding Genes

1624 genes

Non-Coding Genes

79 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Secretion activator proteinCUREO_RS06040Not AvailableNegative1225360 - 122594122580.0
hypothetical proteinCUREO_RS06045Not AvailableNegative1225934 - 122629013661.7
hypothetical proteinCUREO_RS06050Not AvailableNegative1226449 - 122679613460.3
Tail fiber assembly proteinCUREO_RS06055Not AvailableNegative1226793 - 122747325836.0
Tail collar domain-containing proteinCUREO_RS06060Not AvailableNegative1227485 - 122821626458.0
Hypothetical proteinCUREO_RS06065Not AvailableNegative1228204 - 122885124910.3
Hypothetical proteinCUREO_RS06070Not AvailableNegative1228851 - 122996941566.0
Hypothetical proteinCUREO_RS06075Not AvailableNegative1229956 - 123029413262.9
Putative baseplate proteinCUREO_RS06080Not AvailableNegative1230306 - 123091722379.6
Hypothetical proteinCUREO_RS06085Not AvailableNegative1230914 - 123174431108.4

Displaying genes 1 – 10 of 1703 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

180 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da
BASm0002143menaquinone-7C46H64O2Chemical structure of menaquinone-7Not available
Average648.9992Da
Monoisotopic648.4906313Da
BASm00022412-demethylmenaquinone-8C50H70O2Chemical structure of 2-demethylmenaquinone-8Not available
Average703.0896Da
Monoisotopic702.5375815Da

Displaying 1–10 of 180 metabolites

Health Effects

No health effects information available for this bacterium.