Vibrio astriarenae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Vibrio astriarenae is a bacterial species classified within the Vibrio genus, notable for its single replicon structure. The genomic information of this species is accessible under the accession number BBMQ00000000.1. Vibrio species are typically recognized for their ecological diversity and are often found in marine environments. While specific environmental or ecological traits of Vibrio astriarenae are not detailed, members of the Vibrio genus are generally associated with aquatic habitats, including seawater, estuaries, and marine organisms. This suggests that V. astriarenae may also inhabit similar environments, contributing to the biodiversity of microbial communities in these ecosystems. Understanding the genomic characteristics of Vibrio astriarenae, particularly its single replicon, could provide insights into its genetic stability and adaptability in marine conditions. This trait may influence its survival strategies, metabolic capabilities, or interactions with other microorganisms in its habitat. The single replicon structure can also indicate a streamlined genomic organization, which might play a role in its ecological niche and interactions within marine ecosystems. In summary, while specific ecological roles of Vibrio astriarenae remain to be explored, its classification within the Vibrio genus and its genomic traits suggest potential significance in marine microbiology and the ecological dynamics of aquatic environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio astriarenae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio astriarenae
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sp. C7 DNA, contig: contig00050, strain: JCM 19233, whole

Gene Summary

Adenine Count

1476661 bp

Thymine Count

1485839 bp

Guanine Count

1235557 bp

Cytosine Count

1210486 bp

Genome Length

5408543 bp

Protein-coding Genes

7452 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative inner membrane protein yjetJCM19233_6831Not AvailablePositive4948708 - 49488936744.69
protein slyxJCM19233_6832Not AvailableNegative4948909 - 49491338483.92
wd40 repeatJCM19233_6833Not AvailableNegative4949135 - 495005833922.6
fkbp-type peptidyl-prolyl cis-trans isomerase fkpa precursorJCM19233_6834Not AvailablePositive4950258 - 495073417242.6
fkbp-type peptidyl-prolyl cis-trans isomerase fkpa precursorJCM19233_6835Not AvailablePositive4950695 - 495103612321.5
yheo-like pas domainJCM19233_6836Not AvailablePositive4951401 - 495200922470.8
trna 5-methylaminomethyl-2-thiouridine synthase tusdJCM19233_6837Not AvailablePositive4952006 - 495240114050.6
trna 5-methylaminomethyl-2-thiouridine synthase tuscJCM19233_6838Not AvailablePositive4952398 - 495275412901.5
trna 5-methylaminomethyl-2-thiouridine synthase tusbJCM19233_6839Not AvailablePositive4952764 - 49530399867.77
ssu ribosomal protein s12pJCM19233_6840Not AvailablePositive4953190 - 495356413709.8

Displaying genes 6831 – 6840 of 7517 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

5 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm00032855-methyltetrahydropteroyltri-L-glutamateC30H35N9O12Chemical structure of 5-methyltetrahydropteroyltri-L-glutamateNot available
Average713.663Da
Monoisotopic713.2427119Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm00035255-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideC15H21N5O15P2Chemical structure of 5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamideNot available
Average573.303Da
Monoisotopic573.0531333Da

Displaying 1–5 of 5 metabolites

Health Effects

No health effects information available for this bacterium.