Bacteroides nordii CL02T12C05

Gram-negativeRodAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Bacteroides

Description

Bacteroides nordii CL02T12C05 is a Gram-negative, anaerobic bacterium characterized by its rod shape and the presence of flagella. As an anaerobe, it thrives in environments devoid of oxygen, which is typical for many members of the Bacteroides genus, known for their prevalence in the human gut microbiota. This organism possesses a single replicon, indicating a streamlined genetic structure that is often associated with bacteria adapted to specific ecological niches. The accession number AGXS00000000.1 serves as a unique identifier for this strain, facilitating further research and genomic studies. The presence of flagella suggests that Bacteroides nordii CL02T12C05 has the capability for motility, which can be advantageous for navigating its anaerobic environment. This motility may play a role in its ecological interactions within the gut microbiome, influencing its ability to colonize and establish itself alongside other microbial species. In summary, Bacteroides nordii CL02T12C05 exemplifies the adaptations of anaerobic bacteria to their environments through its Gram-negative structure, motility, and genetic organization. Its traits highlight the importance of such microorganisms in maintaining the balance of gut microbiota and their potential roles in human health and disease.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides nordii
StrainCL02T12C05

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Bacteroides nordii CL02T12C05
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacteroides nordii CL02T12C05


Gene Summary

Adenine Count

1646276 bp

Thymine Count

1730882 bp

Guanine Count

1212528 bp

Cytosine Count

1117902 bp

Genome Length

5707589 bp

Protein-coding Genes

4420 genes

Non-Coding Genes

87 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHMPREF1068_00001Not AvailablePositive1 - 1866917.73
23s ribosomal rnaNot AvailableNot AvailablePositive1 - 2220Not Available
5s ribosomal rnaNot AvailableNot AvailablePositive56 - 165Not Available
23s ribosomal rnaNot AvailableNot AvailablePositive246 - 3130Not Available
hypothetical proteinHMPREF1068_00002Not AvailablePositive258 - 4226052.44
hypothetical proteinHMPREF1068_00003Not AvailablePositive579 - 144534553.5
16s ribosomal rnaNot AvailableNot AvailablePositive2874 - 4384Not Available
hypothetical proteinHMPREF1068_00004Not AvailableNegative1868 - 298041473.7
16s ribosomal rnaNot AvailableNot AvailablePositive3784 - 5294Not Available
hypothetical proteinHMPREF1068_00005Not AvailableNegative3042 - 409439950.2

Displaying genes 1 – 10 of 4507 in total

Metabolites

528 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002482,3-dihydroxy-3-methylbutanoateC5H10O4Chemical structure of 2,3-dihydroxy-3-methylbutanoate1756-18-9
Average134.1305Da
Monoisotopic134.0579088Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da

Displaying 1–10 of 528 metabolites

Health Effects

No health effects information available for this bacterium.