Phocaeicola dorei CL02T12C06

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei CL02T12C06 is a Gram-negative, non-motile, rod-shaped bacterium classified as a chemoheterotroph. This organism is an anaerobe, meaning it thrives in environments devoid of oxygen. Its optimal growth temperature is 37°C, and it is categorized as mesophilic, indicating it can grow in moderate temperature ranges typical of many biological systems. The bacterium has a single replicon and is nonsporulating, which suggests it does not form spores as a means of survival under adverse conditions. P. dorei is found in multiple habitats, although specific environments are not detailed in the available data. The presence of flagella indicates that, while this strain is non-motile, it may possess the potential for movement in other contexts or under different conditions. The significance of these traits lies in the bacterium's ecological role; as a chemoheterotroph, P. dorei likely contributes to the breakdown of organic matter in anaerobic environments, facilitating nutrient cycling within its habitat. Understanding the characteristics of P. dorei can provide insights into its ecological functions and its interactions with other microorganisms in diverse ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainCL02T12C06

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei CL02T12C06
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei CL02T12C06 cont1.110, whole genome shotgun

Gene Summary

Adenine Count

1756647 bp

Thymine Count

1710049 bp

Guanine Count

1247135 bp

Cytosine Count

1283480 bp

Genome Length

5997311 bp

Protein-coding Genes

5172 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diaminopimelate dehydrogenaseHMPREF1064_05050Not AvailableNegative5875269 - 587616832319.0
holliday junction atp-dependent dna helicase ruvaHMPREF1064_05051Not AvailablePositive5876344 - 587693721171.8
hypothetical proteinHMPREF1064_05052Not AvailableNegative5877023 - 587784730836.0
hypothetical proteinHMPREF1064_05053Not AvailablePositive5877865 - 587936757494.8
hemolysin iii family channel proteinHMPREF1064_05054Not AvailablePositive5879372 - 588000723692.3
anaerobic ribonucleoside-triphosphate reductaseHMPREF1064_05055Not AvailablePositive5880302 - 588257886255.1
anaerobic ribonucleoside-triphosphate reductase activating proteinHMPREF1064_05056Not AvailablePositive5882584 - 588304217378.7
rip metalloprotease rsepHMPREF1064_05057Not AvailableNegative5883607 - 588495050879.3
1-deoxy-d-xylulose 5-phosphate reductoisomeraseHMPREF1064_05058Not AvailableNegative5885007 - 588615542384.3
hypothetical proteinHMPREF1064_05059Not AvailableNegative5886163 - 588702032093.4

Displaying genes 5171 – 5180 of 5319 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.