Phocaeicola dorei CL02T12C06

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Bacteroidaceae

Genus

Phocaeicola

Description

Phocaeicola dorei CL02T12C06 is a Gram-negative, non-motile, rod-shaped bacterium classified as a chemoheterotroph. This organism is an anaerobe, meaning it thrives in environments devoid of oxygen. Its optimal growth temperature is 37°C, and it is categorized as mesophilic, indicating it can grow in moderate temperature ranges typical of many biological systems. The bacterium has a single replicon and is nonsporulating, which suggests it does not form spores as a means of survival under adverse conditions. P. dorei is found in multiple habitats, although specific environments are not detailed in the available data. The presence of flagella indicates that, while this strain is non-motile, it may possess the potential for movement in other contexts or under different conditions. The significance of these traits lies in the bacterium's ecological role; as a chemoheterotroph, P. dorei likely contributes to the breakdown of organic matter in anaerobic environments, facilitating nutrient cycling within its habitat. Understanding the characteristics of P. dorei can provide insights into its ecological functions and its interactions with other microorganisms in diverse ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusPhocaeicola
SpeciesPhocaeicola dorei
StrainCL02T12C06

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Phocaeicola dorei CL02T12C06
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Phocaeicola dorei CL02T12C06 cont1.110, whole genome shotgun

Gene Summary

Adenine Count

1756647 bp

Thymine Count

1710049 bp

Guanine Count

1247135 bp

Cytosine Count

1283480 bp

Genome Length

5997311 bp

Protein-coding Genes

5172 genes

Non-Coding Genes

147 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cation diffusion facilitator family transporterHMPREF1064_01700Not AvailablePositive1914129 - 191507034563.6
hypothetical proteinHMPREF1064_01701Not AvailablePositive1915081 - 191612740230.5
hypothetical proteinHMPREF1064_01702Not AvailablePositive1916118 - 191709537776.6
hypothetical proteinHMPREF1064_01703Not AvailablePositive1917272 - 191812329141.2
trna dihydrouridine synthase aHMPREF1064_01704Not AvailableNegative1918203 - 191919237213.5
hypothetical proteinHMPREF1064_01705Not AvailablePositive1919343 - 192060547014.9
hypothetical proteinHMPREF1064_01706Not AvailableNegative1920756 - 192230658696.8
susc/raga family tonb-linked outer membrane proteinHMPREF1064_01707Not AvailableNegative1922322 - 1925408114122.0
arginyl-trna synthetaseHMPREF1064_01708Not AvailablePositive1926102 - 192792268029.7
hypothetical proteinHMPREF1064_01709Not AvailablePositive1927923 - 192854923900.6

Displaying genes 1791 – 1800 of 5319 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.