Prevotella nigrescens ATCC 33563

Gram-negativeAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Prevotella

Description

Prevotella nigrescens ATCC 33563 is a Gram-negative, anaerobic bacterium that exhibits the presence of flagella. This organism is part of the Prevotella genus, which is known for its role in the human microbiome, particularly in the oral cavity and gastrointestinal tract. The anaerobic nature of P. nigrescens suggests that it thrives in oxygen-deprived environments, which is typical for many members of the Prevotella species. P. nigrescens ATCC 33563 has a single replicon, indicating a relatively simple genomic structure compared to organisms with multiple replicons. The specific accession number for the genomic data of this strain is AFPX00000000.1, which can be used to reference its genetic information in various biological databases. The ecological significance of Prevotella nigrescens lies in its contribution to the overall microbial community within the host. As an anaerobe, it plays a crucial role in the fermentation of dietary fibers and the metabolism of complex carbohydrates, which can influence host health and disease states, including oral health and systemic conditions. The presence of flagella may also provide motility advantages, aiding this bacterium in colonizing specific niches within the anaerobic environments it inhabits. Overall, P. nigrescens ATCC 33563 represents an important component of the microbial ecosystem with potential implications for human health.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusPrevotella
SpeciesPrevotella nigrescens
StrainATCC 33563

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prevotella nigrescens ATCC 33563


Gene Summary

Adenine Count

747817 bp

Thymine Count

751486 bp

Guanine Count

555600 bp

Cytosine Count

557327 bp

Genome Length

2612230 bp

Protein-coding Genes

2421 genes

Non-Coding Genes

50 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHMPREF9419_0007Not AvailableNegative5506 - 56796757.19
trigger factorHMPREF9419_0008Not AvailableNegative5707 - 714954905.5
formate-tetrahydrofolate ligaseHMPREF9419_0009Not AvailableNegative7413 - 908059862.8
hypothetical proteinHMPREF9419_0010Not AvailableNegative9392 - 95415886.21
hypothetical proteinHMPREF9419_0011Not AvailableNegative9722 - 1074139065.5
hypothetical proteinHMPREF9419_0012Not AvailableNegative10741 - 1155930329.4
dna topoisomerase 4 subunit aHMPREF9419_0013Not AvailableNegative11567 - 14404107647.0
hypothetical proteinHMPREF9419_0014Not AvailablePositive14875 - 150215266.41
hypothetical proteinHMPREF9419_0015Not AvailablePositive15066 - 151975284.72
hypothetical proteinHMPREF9419_0016Not AvailablePositive15341 - 1696060861.8

Displaying genes 11 – 20 of 2471 in total

Metabolites

321 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 321 metabolites

Health Effects

No health effects information available for this bacterium.