Pseudomonas brassicacearum subsp. brassicacearum NFM421

Gram-negative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas brassicacearum subsp. brassicacearum NFM421 is a Gram-negative bacterium predominantly found in root nodules. This subspecies is characterized by having a single replicon, which is indicative of its genomic structure. The strain is cataloged under the accession NC_015379.1, providing a reference for genomic studies and further research. The presence of Pseudomonas brassicacearum subsp. brassicacearum in root nodules suggests a potential role in plant-microbe interactions, particularly in nitrogen fixation or nutrient cycling. Root nodules are known to house various beneficial bacteria that can enhance plant growth and health. The specific ecological niche occupied by NFM421 highlights the importance of microbial diversity in agricultural systems and natural ecosystems. In summary, the traits of Pseudomonas brassicacearum subsp. brassicacearum NFM421 reveal its Gram-negative nature, unique genomic structure with a single replicon, and its habitat within root nodules, positioning the bacterium as a potential contributor to plant health and soil fertility. Understanding its function within the root nodule environment can offer insights into sustainable agricultural practices and the management of soil microbiomes.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas brassicacearum
Strainbrassicacearum NFM421

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas brassicacearum subsp. brassicacearum NFM421
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatRoot nodule
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas brassicacearum subsp. brassicacearum NFM421, complete

Gene Summary

Adenine Count

1340209 bp

Thymine Count

1343075 bp

Guanine Count

2081424 bp

Cytosine Count

2078540 bp

Genome Length

6843248 bp

Protein-coding Genes

6004 genes

Non-Coding Genes

130 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hcp family type vi secretion system effectorPSEBR_RS17635Not AvailablePositive4102906 - 410340317592.9
type vi secretion system baseplate subunit tssePSEBR_RS17640Not AvailablePositive4103417 - 410386016702.9
type vi secretion system baseplate subunit tssfPSEBR_RS17645Q9I744Positive4103844 - 410563465889.5
type vi secretion system baseplate subunit tssgPSEBR_RS17650Not AvailablePositive4105598 - 410662337125.8
type vi secretion system atpase tsshPSEBR_RS17655Q9I742Positive4106625 - 410916892407.0
hypothetical proteinPSEBR_RS17660Not AvailablePositive4109197 - 410993727700.7
type vi secretion system tip protein tssi/vgrgPSEBR_RS17665Q9I737Positive4110075 - 411208472388.6
toxin-antitoxin system ywqk family antitoxinPSEBR_RS17670Not AvailablePositive4112098 - 411264020049.4
duf4280 domain-containing proteinPSEBR_RS17675Not AvailableNegative4112683 - 411307813178.7
phosphotransferase family proteinPSEBR_RS17680Q8K370Positive4113264 - 411433140731.6

Displaying genes 3611 – 3620 of 6134 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

402 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da

Displaying 1–10 of 402 metabolites

Health Effects

No health effects information available for this bacterium.