Helicobacter pylori Hp H-16

Gram-negativeSpirillaNon-motileMicroaerophilic

Kingdom

Pseudomonadati

Phylum

Campylobacterota

Class

Epsilonproteobacteria

Order

Campylobacterales

Family

Helicobacteraceae

Genus

Helicobacter

Description

Helicobacter pylori Hp H-16 is a Gram-negative bacterium characterized by its microaerophilic oxygen requirement and spiral shape, classified as spirilla. This organism typically resides in a host-associated habitat, where it is known to engage in a free-living biotic relationship. The bacterium is non-motile despite possessing flagella, which may play a role in its interaction with the host environment. H. pylori Hp H-16 has a singular replicon and features a double-membrane structure, consistent with its classification as a Gram-negative organism. Its optimal growth temperature is 37°C, placing it within the mesophilic temperature range, which is conducive to growth in the human stomach, where it is typically found. The presence of flagella, even though the organism is described as non-motile, suggests a potential for movement within the viscous environment of the gastric mucosa. This may enable the bacterium to navigate the gastric landscape and establish itself in the protective niches within the stomach lining. Ecologically, H. pylori Hp H-16 serves a significant role in the human microbiome, influencing gastric health and disease. Its adaptation to a microaerophilic environment and ability to thrive at body temperature highlight its specialization as a pathogen. Understanding its traits can provide insights into its survival strategies within the host and its implications for gastrointestinal health. Accessions for this strain include AKOF00000000.1, which can be referenced for further study.

Taxonomy

KingdomPseudomonadati
PhylumCampylobacterota
ClassEpsilonproteobacteria
OrderCampylobacterales
FamilyHelicobacteraceae
GenusHelicobacter
SpeciesHelicobacter pylori
StrainHp H-16

Profile

Physiology
Gram staining propertiesNegative
ShapeSpirilla
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Helicobacter pylori Hp H-16
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsMicroaerophilic
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Helicobacter pylori Hp H-16


Gene Summary

Adenine Count

513752 bp

Thymine Count

528531 bp

Guanine Count

333965 bp

Cytosine Count

333386 bp

Genome Length

1709635 bp

Protein-coding Genes

1686 genes

Non-Coding Genes

42 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
type i restriction modification dna specificity domain family proteinHPHPH16_0001Not AvailablePositive20 - 2538921.82
outer membrane protein hoffHPHPH16_0002Not AvailableNegative468 - 196756966.2
liporelease system transmembrane proteinHPHPH16_0003Not AvailableNegative2246 - 347846043.2
preprotein translocase, seca subunitHPHPH16_0004Q9ZL57Negative3468 - 606599011.1
outer-membrane lipocarrier proteinHPHPH16_0005Q9ZL58Positive6212 - 676621422.2
Tmrna,resume consensus sequence (at 77): aataactgtaaacaacgcNot AvailableNot AvailablePositive6822 - 7207Not Available
hypothetical proteinHPHPH16_0006Not AvailablePositive7251 - 777819998.9
outermembrane protein hofeHPHPH16_0007Not AvailableNegative7785 - 915252058.8
hypothetical proteinHPHPH16_0008Not AvailableNegative9250 - 1053949506.1
hypothetical proteinHPHPH16_0009Not AvailablePositive10533 - 107096880.6

Displaying genes 1 – 10 of 1728 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

92 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001697(S)-4,5-dihydroxypentane-2,3-dioneC5H8O4Chemical structure of (S)-4,5-dihydroxypentane-2,3-dioneNot available
Average132.1146Da
Monoisotopic132.042258744Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 92 metabolites

Health Effects

No health effects information available for this bacterium.