Ruegeria halocynthiae

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria halocynthiae is a Gram-negative, non-motile bacterial species characterized by its rod-shaped morphology. This organism thrives in mesophilic conditions with an optimal growth temperature of 29°C, indicating its preference for moderate temperature environments. R. halocynthiae has a singular replicon, which is a notable trait for its genetic organization. The genome of this bacterium can be accessed through the accession number FNNP00000000.1, providing a resource for further genomic and functional studies. From a biological and ecological perspective, the adaptations of Ruegeria halocynthiae to its mesophilic environment may suggest its role in marine ecosystems, particularly in interactions with marine organisms. Its Gram-negative nature may also play a role in its ecological interactions, such as nutrient cycling or symbiotic relationships, although specific interactions are not detailed in the provided traits. Understanding the growth conditions and genetic framework of R. halocynthiae could provide insights into its ecological niches and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria halocynthiae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Crambe crambe
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria halocynthiae strain DSM 27839 genome assembly, contig:

Gene Summary

Adenine Count

921858 bp

Thymine Count

924279 bp

Guanine Count

1199491 bp

Cytosine Count

1198040 bp

Genome Length

4243668 bp

Protein-coding Genes

4188 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
microcin c transport system substrate-binding proteinSAMN05444358_106157Not AvailablePositive3104990 - 310690070597.4
microcin c transport system permease proteinSAMN05444358_106158Not AvailablePositive3106902 - 310799639513.8
microcin c transport system permease proteinSAMN05444358_106159Not AvailablePositive3107997 - 310910341205.3
microcin c transport system atp-binding proteinSAMN05444358_106160Not AvailablePositive3109100 - 311067757641.6
elongation factor gSAMN05444358_106161Not AvailableNegative3110700 - 311262569099.6
oxygen-independent coproporphyrinogen-3 oxidaseSAMN05444358_106162Not AvailableNegative3112840 - 311419550014.6
crp/fnr family transcriptional regulator, anaerobic regulatory proteinSAMN05444358_106163Not AvailablePositive3114257 - 311500027613.5
uncharacterized membrane protein yeaq/ymge, transglycosylase-associated protein familySAMN05444358_106164Not AvailablePositive3115046 - 31153008480.92
universal stress protein family proteinSAMN05444358_106165Not AvailableNegative3115348 - 311618730422.5
cytochrome c oxidase cbb3-type subunit 1SAMN05444358_106166Not AvailablePositive3116382 - 311798960230.3

Displaying genes 3121 – 3130 of 4253 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.