Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria halocynthiae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative / gram-positive |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Crambe crambe |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
921858 bp
Thymine Count
924279 bp
Guanine Count
1199491 bp
Cytosine Count
1198040 bp
Genome Length
4243668 bp
Protein-coding Genes
4188 genes
Non-Coding Genes
65 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription termination factor rho | SAMN05444358_105139 | Not Available | Negative | 2878229 - 2879500 | 47082.7 |
| putative membrane protein | SAMN05444358_105140 | Not Available | Negative | 2879627 - 2880076 | 17482.1 |
| septum formation protein | SAMN05444358_105141 | Not Available | Positive | 2880481 - 2881080 | 21817.5 |
| shikimate dehydrogenase | SAMN05444358_105142 | Not Available | Positive | 2881077 - 2881910 | 29577.3 |
| dephospho-coa kinase | SAMN05444358_105143 | Not Available | Positive | 2881907 - 2882500 | 21327.6 |
| dna polymerase-3 subunit epsilon | SAMN05444358_105144 | Not Available | Positive | 2882493 - 2883215 | 26351.2 |
| protein translocase subunit secb | SAMN05444358_105145 | Not Available | Negative | 2883241 - 2883744 | 18865.7 |
| upf0716 protein fxsa | SAMN05444358_105146 | Not Available | Negative | 2883799 - 2884299 | 18271.5 |
| predicted lipid-binding transport protein, tim44 family | SAMN05444358_105147 | Not Available | Positive | 2884408 - 2885067 | 24140.4 |
| membrane-bound lytic murein transglycosylase a | SAMN05444358_105148 | Not Available | Positive | 2885064 - 2886104 | 37814.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
