Ruegeria halocynthiae

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria halocynthiae is a Gram-negative, non-motile bacterial species characterized by its rod-shaped morphology. This organism thrives in mesophilic conditions with an optimal growth temperature of 29°C, indicating its preference for moderate temperature environments. R. halocynthiae has a singular replicon, which is a notable trait for its genetic organization. The genome of this bacterium can be accessed through the accession number FNNP00000000.1, providing a resource for further genomic and functional studies. From a biological and ecological perspective, the adaptations of Ruegeria halocynthiae to its mesophilic environment may suggest its role in marine ecosystems, particularly in interactions with marine organisms. Its Gram-negative nature may also play a role in its ecological interactions, such as nutrient cycling or symbiotic relationships, although specific interactions are not detailed in the provided traits. Understanding the growth conditions and genetic framework of R. halocynthiae could provide insights into its ecological niches and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria halocynthiae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Crambe crambe
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria halocynthiae strain DSM 27839 genome assembly, contig:

Gene Summary

Adenine Count

921858 bp

Thymine Count

924279 bp

Guanine Count

1199491 bp

Cytosine Count

1198040 bp

Genome Length

4243668 bp

Protein-coding Genes

4188 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
23s rrna m(5)u-1939 methyltransferaseSAMN05444358_105109Not AvailableNegative2845272 - 284650143874.6
atp-binding cassette, subfamily bSAMN05444358_105110Not AvailableNegative2846541 - 284837365744.6
atp-binding cassette, subfamily b, multidrug efflux pumpSAMN05444358_105111Not AvailableNegative2848370 - 285020867616.2
poly(a) polymeraseSAMN05444358_105112Not AvailableNegative2850403 - 285155741667.7
8-oxo-dgtp pyrophosphatase mutt, nudix familySAMN05444358_105113Not AvailableNegative2851554 - 285215321843.2
molecular chaperone hsp33SAMN05444358_105114Not AvailableNegative2852143 - 285312935587.8
8-oxo-dgtp diphosphataseSAMN05444358_105115Not AvailablePositive2853206 - 285364916655.1
sigma-b regulation protein rsbu (phosphoserine phosphatase)SAMN05444358_105116Not AvailableNegative2853646 - 285492046755.1
hpt domain-containing proteinSAMN05444358_105117Not AvailablePositive2855063 - 285539212244.2
l-threonine ammonia-lyaseSAMN05444358_105118Not AvailableNegative2855389 - 285661544774.7

Displaying genes 2861 – 2870 of 4253 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.