Ruegeria halocynthiae

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria halocynthiae is a Gram-negative, non-motile bacterial species characterized by its rod-shaped morphology. This organism thrives in mesophilic conditions with an optimal growth temperature of 29°C, indicating its preference for moderate temperature environments. R. halocynthiae has a singular replicon, which is a notable trait for its genetic organization. The genome of this bacterium can be accessed through the accession number FNNP00000000.1, providing a resource for further genomic and functional studies. From a biological and ecological perspective, the adaptations of Ruegeria halocynthiae to its mesophilic environment may suggest its role in marine ecosystems, particularly in interactions with marine organisms. Its Gram-negative nature may also play a role in its ecological interactions, such as nutrient cycling or symbiotic relationships, although specific interactions are not detailed in the provided traits. Understanding the growth conditions and genetic framework of R. halocynthiae could provide insights into its ecological niches and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria halocynthiae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Crambe crambe
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria halocynthiae strain DSM 27839 genome assembly, contig:

Gene Summary

Adenine Count

921858 bp

Thymine Count

924279 bp

Guanine Count

1199491 bp

Cytosine Count

1198040 bp

Genome Length

4243668 bp

Protein-coding Genes

4188 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc proteaseSAMN05444358_104250Not AvailablePositive2706142 - 270748249491.1
zinc proteaseSAMN05444358_104251Not AvailablePositive2707479 - 270878947334.7
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05444358_104252Not AvailableNegative2708952 - 270976728002.5
aldehyde dehydrogenase (nad+)SAMN05444358_104253Not AvailableNegative2709792 - 271212582971.1
deoxyribose-phosphate aldolaseSAMN05444358_104254Not AvailableNegative2712137 - 271313536057.4
manganese/zinc/iron transport system substrate-binding proteinSAMN05444358_104255Not AvailablePositive2713333 - 271428633828.2
manganese/zinc/iron transport system atp-binding proteinSAMN05444358_104256Not AvailablePositive2714290 - 271509328676.8
manganese/zinc/iron transport system permease proteinSAMN05444358_104257Not AvailablePositive2715096 - 271630142442.3
manganese/zinc/iron transport system permease proteinSAMN05444358_104258Not AvailablePositive2716298 - 271722731964.8
dna mismatch repair protein mutlSAMN05444358_104259Not AvailablePositive2717512 - 271936266401.3

Displaying genes 2731 – 2740 of 4253 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.