Ruegeria halocynthiae

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria halocynthiae is a Gram-negative, non-motile bacterial species characterized by its rod-shaped morphology. This organism thrives in mesophilic conditions with an optimal growth temperature of 29°C, indicating its preference for moderate temperature environments. R. halocynthiae has a singular replicon, which is a notable trait for its genetic organization. The genome of this bacterium can be accessed through the accession number FNNP00000000.1, providing a resource for further genomic and functional studies. From a biological and ecological perspective, the adaptations of Ruegeria halocynthiae to its mesophilic environment may suggest its role in marine ecosystems, particularly in interactions with marine organisms. Its Gram-negative nature may also play a role in its ecological interactions, such as nutrient cycling or symbiotic relationships, although specific interactions are not detailed in the provided traits. Understanding the growth conditions and genetic framework of R. halocynthiae could provide insights into its ecological niches and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria halocynthiae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Crambe crambe
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria halocynthiae strain DSM 27839 genome assembly, contig:

Gene Summary

Adenine Count

921858 bp

Thymine Count

924279 bp

Guanine Count

1199491 bp

Cytosine Count

1198040 bp

Genome Length

4243668 bp

Protein-coding Genes

4188 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lsu ribosomal protein l35pSAMN05444358_103253Not AvailableNegative2389665 - 23898657354.23
alanine or glycine:cation symporter, agcs familySAMN05444358_103254Not AvailableNegative2390049 - 239159954563.9
nucleotide-binding universal stress protein, uspa familySAMN05444358_103255Not AvailableNegative2391614 - 239205115637.7
pyruvate kinaseSAMN05444358_103256Not AvailableNegative2392294 - 239373951504.0
predicted n-formylglutamate amidohydrolaseSAMN05444358_103257Not AvailablePositive2393857 - 239459427277.3
hypothetical proteinSAMN05444358_103258Not AvailablePositive2394671 - 23949109352.91
hypothetical proteinSAMN05444358_103259Not AvailablePositive2395012 - 239532612097.2
d-alanine transaminaseSAMN05444358_103260Not AvailableNegative2395371 - 239623131628.8
l-alanine-dl-glutamate epimeraseSAMN05444358_103261Not AvailableNegative2396243 - 239720834464.3
uncharacterized conserved protein, nad-dependent epimerase/dehydratase familySAMN05444358_103262Not AvailableNegative2397280 - 239828135416.6

Displaying genes 2401 – 2410 of 4253 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.