Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria halocynthiae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative / gram-positive |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Crambe crambe |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
921858 bp
Thymine Count
924279 bp
Guanine Count
1199491 bp
Cytosine Count
1198040 bp
Genome Length
4243668 bp
Protein-coding Genes
4188 genes
Non-Coding Genes
65 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate-semialdehyde dehydrogenase / glutarate-semialdehyde dehydrogenase | SAMN05444358_102126 | Not Available | Positive | 1951393 - 1951605 | 7033.35 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN05444358_102127 | Not Available | Positive | 1951717 - 1952571 | 31413.0 |
| 2-oxohept-3-enedioate hydratase | SAMN05444358_102128 | Not Available | Positive | 1952568 - 1953368 | 28789.3 |
| 2,4-dihydroxyhept-2-enedioate aldolase | SAMN05444358_102129 | Not Available | Positive | 1953381 - 1954439 | 37716.0 |
| hypothetical protein | SAMN05444358_102130 | Not Available | Positive | 1954865 - 1955152 | 10656.2 |
| proline 4-hydroxylase (includes rps23 pro-64 3,4-dihydroxylase tpa1), contains sm-20 domain | SAMN05444358_102131 | Not Available | Negative | 1955174 - 1956013 | 32273.3 |
| exosortase d, vplpa-cterm-specific | SAMN05444358_102132 | Not Available | Negative | 1956109 - 1957725 | 59801.3 |
| methyltransferase domain-containing protein | SAMN05444358_102133 | Not Available | Positive | 1958065 - 1958778 | 26980.9 |
| glycosyltransferase, gt2 family | SAMN05444358_102134 | Not Available | Positive | 1959359 - 1960339 | 36811.4 |
| predicted dehydrogenase | SAMN05444358_102135 | Not Available | Positive | 1960350 - 1962443 | 75853.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
