Ruegeria halocynthiae

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria halocynthiae is a Gram-negative, non-motile bacterial species characterized by its rod-shaped morphology. This organism thrives in mesophilic conditions with an optimal growth temperature of 29°C, indicating its preference for moderate temperature environments. R. halocynthiae has a singular replicon, which is a notable trait for its genetic organization. The genome of this bacterium can be accessed through the accession number FNNP00000000.1, providing a resource for further genomic and functional studies. From a biological and ecological perspective, the adaptations of Ruegeria halocynthiae to its mesophilic environment may suggest its role in marine ecosystems, particularly in interactions with marine organisms. Its Gram-negative nature may also play a role in its ecological interactions, such as nutrient cycling or symbiotic relationships, although specific interactions are not detailed in the provided traits. Understanding the growth conditions and genetic framework of R. halocynthiae could provide insights into its ecological niches and potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria halocynthiae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative / gram-positive
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Crambe crambe
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria halocynthiae strain DSM 27839 genome assembly, contig:

Gene Summary

Adenine Count

921858 bp

Thymine Count

924279 bp

Guanine Count

1199491 bp

Cytosine Count

1198040 bp

Genome Length

4243668 bp

Protein-coding Genes

4188 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative tricarboxylic transport membrane proteinSAMN05444358_102116Not AvailableNegative1941665 - 194319754487.6
tripartite tricarboxylate transporter tctb family proteinSAMN05444358_102117Not AvailableNegative1943208 - 194374420312.3
tripartite-type tricarboxylate transporter, receptor component tctcSAMN05444358_102118Not AvailableNegative1943805 - 194473432695.8
transcriptional regulator, iclr familySAMN05444358_102119Not AvailablePositive1944843 - 194562228072.8
hypothetical proteinSAMN05444358_102120Not AvailablePositive1945656 - 194700848578.9
homoprotocatechuate degradation operon regulator, hparSAMN05444358_102121Not AvailableNegative1947041 - 194748116686.4
5-carboxymethyl-2-hydroxymuconate isomeraseSAMN05444358_102122Not AvailablePositive1947587 - 194797614370.2
5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenaseSAMN05444358_102123Not AvailablePositive1947973 - 194948455070.6
3,4-dihydroxyphenylacetate 2,3-dioxygenaseSAMN05444358_102124Not AvailablePositive1949535 - 195038631291.1
catechol 2,3-dioxygenaseSAMN05444358_102125Not AvailablePositive1950399 - 195138237332.9

Displaying genes 1971 – 1980 of 4253 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.