Lacinutrix sp. 5H-3-7-4

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Lacinutrix

Description

Lacinutrix sp. 5H-3-7-4 is characterized by having a single replicon, indicating a streamlined genomic architecture. The organism is cataloged under the accession number NC_015638.1, which provides a reference point for genomic studies and comparative analysis within the broader context of the Lacinutrix genus. The presence of a single replicon suggests a potential adaptation to a specific ecological niche, allowing for efficient replication and resource utilization. This trait may confer advantages in environments where rapid growth and adaptability are beneficial, although specific ecological roles and interactions remain to be elucidated. The genomic data associated with Lacinutrix sp. 5H-3-7-4 could be instrumental in understanding its metabolic pathways and ecological functions. Further exploration of its genetic makeup may reveal insights into its evolutionary adaptations and interactions within microbial communities. This organism's streamlined genomic structure may also provide clues about the ecological pressures it faces, particularly in environments where competition for resources is high. In summary, Lacinutrix sp. 5H-3-7-4, with its single replicon and defined genomic reference, presents an intriguing subject for further microbiological research, particularly regarding its ecological role and evolutionary strategies within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusLacinutrix
SpeciesLacinutrix sp. 5H-3-7-4
Strain5H-3-7-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmarine sediment; subseafloor sediment; subseafloor sediments
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacinutrix sp. 5H-3-7-4


Gene Summary

Adenine Count

1151995 bp

Thymine Count

1128188 bp

Guanine Count

509719 bp

Cytosine Count

506266 bp

Genome Length

3296168 bp

Protein-coding Genes

2967 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chromosomal replication initiator protein dnaaLACAL_RS00010Not AvailablePositive13 - 144054185.2
low molecular weight protein-tyrosine-phosphataseLACAL_RS00015Not AvailablePositive1453 - 191117008.3
pqq-dependent sugar dehydrogenaseLACAL_RS00020Not AvailablePositive1964 - 336751053.6
sam-dependent methyltransferaseLACAL_RS00025Not AvailablePositive3368 - 408426684.4
hypothetical proteinLACAL_RS00030Not AvailableNegative4089 - 477525656.2
duf2279 domain-containing proteinLACAL_RS00035Not AvailableNegative4886 - 579434355.9
endolytic transglycosylase mltgLACAL_RS00040Not AvailableNegative5794 - 683739888.1
gnat family n-acetyltransferaseLACAL_RS00045Not AvailableNegative6837 - 735820393.4
diaminopimelate epimeraseLACAL_RS00050Not AvailableNegative7352 - 813128612.7
trypsin-like peptidase domain-containing proteinLACAL_RS00055Not AvailablePositive8269 - 967250579.2

Displaying genes 1 – 10 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.