Lacinutrix sp. 5H-3-7-4

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Lacinutrix

Description

Lacinutrix sp. 5H-3-7-4 is characterized by having a single replicon, indicating a streamlined genomic architecture. The organism is cataloged under the accession number NC_015638.1, which provides a reference point for genomic studies and comparative analysis within the broader context of the Lacinutrix genus. The presence of a single replicon suggests a potential adaptation to a specific ecological niche, allowing for efficient replication and resource utilization. This trait may confer advantages in environments where rapid growth and adaptability are beneficial, although specific ecological roles and interactions remain to be elucidated. The genomic data associated with Lacinutrix sp. 5H-3-7-4 could be instrumental in understanding its metabolic pathways and ecological functions. Further exploration of its genetic makeup may reveal insights into its evolutionary adaptations and interactions within microbial communities. This organism's streamlined genomic structure may also provide clues about the ecological pressures it faces, particularly in environments where competition for resources is high. In summary, Lacinutrix sp. 5H-3-7-4, with its single replicon and defined genomic reference, presents an intriguing subject for further microbiological research, particularly regarding its ecological role and evolutionary strategies within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusLacinutrix
SpeciesLacinutrix sp. 5H-3-7-4
Strain5H-3-7-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmarine sediment; subseafloor sediment; subseafloor sediments
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacinutrix sp. 5H-3-7-4, complete sequence.

Gene Summary

Adenine Count

1151995 bp

Thymine Count

1128188 bp

Guanine Count

509719 bp

Cytosine Count

506266 bp

Genome Length

3296168 bp

Protein-coding Genes

2967 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna polymerase factor sigma-54LACAL_RS03555Not AvailablePositive800216 - 80167055719.8
membrane proteinLACAL_RS03560Not AvailablePositive801670 - 80229923603.4
porin family proteinLACAL_RS03565Not AvailableNegative802294 - 80299526904.0
exbd/tolr family proteinLACAL_RS03570Not AvailableNegative803108 - 80358717932.8
exbd/tolr family proteinLACAL_RS03575Not AvailableNegative803601 - 80423323673.5
hypothetical proteinLACAL_RS03580Not AvailableNegative804236 - 80467615312.6
mota/tolq/exbb proton channel family proteinLACAL_RS03585Not AvailableNegative804706 - 80547927417.8
asparaginaseLACAL_RS03590Not AvailableNegative805721 - 80675238504.7
tatd family hydrolaseLACAL_RS03595Not AvailableNegative806783 - 80755029577.6
tetratricopeptide repeat proteinLACAL_RS03600Not AvailableNegative807614 - 80835728388.6

Displaying genes 711 – 720 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.