Lacinutrix sp. 5H-3-7-4

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Lacinutrix

Description

Lacinutrix sp. 5H-3-7-4 is characterized by having a single replicon, indicating a streamlined genomic architecture. The organism is cataloged under the accession number NC_015638.1, which provides a reference point for genomic studies and comparative analysis within the broader context of the Lacinutrix genus. The presence of a single replicon suggests a potential adaptation to a specific ecological niche, allowing for efficient replication and resource utilization. This trait may confer advantages in environments where rapid growth and adaptability are beneficial, although specific ecological roles and interactions remain to be elucidated. The genomic data associated with Lacinutrix sp. 5H-3-7-4 could be instrumental in understanding its metabolic pathways and ecological functions. Further exploration of its genetic makeup may reveal insights into its evolutionary adaptations and interactions within microbial communities. This organism's streamlined genomic structure may also provide clues about the ecological pressures it faces, particularly in environments where competition for resources is high. In summary, Lacinutrix sp. 5H-3-7-4, with its single replicon and defined genomic reference, presents an intriguing subject for further microbiological research, particularly regarding its ecological role and evolutionary strategies within its habitat.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusLacinutrix
SpeciesLacinutrix sp. 5H-3-7-4
Strain5H-3-7-4

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatmarine sediment; subseafloor sediment; subseafloor sediments
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lacinutrix sp. 5H-3-7-4, complete sequence.

Gene Summary

Adenine Count

1151995 bp

Thymine Count

1128188 bp

Guanine Count

509719 bp

Cytosine Count

506266 bp

Genome Length

3296168 bp

Protein-coding Genes

2967 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase hisbLACAL_RS12190Not AvailablePositive2703253 - 270439243098.5
imidazole glycerol phosphate synthase subunit hishLACAL_RS12195Not AvailablePositive2704392 - 270497321369.9
duf3592 domain-containing proteinLACAL_RS12200Not AvailablePositive2704994 - 270544016685.7
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomeraseLACAL_RS12205Not AvailablePositive2705554 - 270629727232.8
imidazole glycerol phosphate synthase subunit hisfLACAL_RS12210Not AvailablePositive2706376 - 270713126810.4
bifunctional phosphoribosyl-amp cyclohydrolase/phosphoribosyl-atp diphosphatase hisieLACAL_RS12215Not AvailablePositive2707252 - 270785422370.6
s41 family peptidaseLACAL_RS12220Not AvailableNegative2707901 - 270910046610.9
lyttr family dna-binding domain-containing proteinLACAL_RS12225Not AvailableNegative2709196 - 270999331050.5
hypothetical proteinLACAL_RS12230Not AvailableNegative2710061 - 271047715368.5
trna pseudouridine synthase aLACAL_RS12235Not AvailablePositive2710575 - 271135129933.8

Displaying genes 2461 – 2470 of 3013 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.