Ruegeria conchae str. DSM 29317

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria conchae str. DSM 29317 is a Gram-negative, non-motile rod-shaped bacterium that resides in the intestines of its host, the shrimp species Penaeus vannamei. This organism is classified as aerobic, indicating that it requires oxygen for growth and metabolic processes. Its optimal growth temperature is 29°C, placing it within the mesophilic temperature range, which is conducive to its life in the warm aquatic environments inhabited by its host. Ruegeria conchae str. DSM 29317 has a single replicon, suggesting a streamlined genomic organization. The strain is cataloged under the accession number RCCT00000000.1, which serves as a reference for researchers interested in studying its genetic and functional characteristics. The association of Ruegeria conchae with Penaeus vannamei highlights its potential role in the gut microbiome of marine organisms. Such interactions may be crucial for the host's health, contributing to nutrient absorption and overall digestive efficiency. Additionally, understanding the microbial communities in the intestines of marine species can provide insights into their ecological adaptations and health maintenance, particularly in the context of aquaculture where shrimp farming is economically significant.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria conchae
StrainDSM 29317

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatIntestines
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria conchae strain DSM 29317 Ga0181028_117, whole genome

Gene Summary

Adenine Count

997434 bp

Thymine Count

996553 bp

Guanine Count

1264325 bp

Cytosine Count

1246353 bp

Genome Length

4504665 bp

Protein-coding Genes

4343 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative zn-binding protein involved in type vi secretionCLV75_4195Not AvailablePositive4190933 - 419124110274.1
fha domain proteinCLV75_4196Not AvailablePositive4191252 - 419270951622.8
type vi secretion system protein impjCLV75_4197Not AvailablePositive4192747 - 419408748981.3
type vi secretion system protein impkCLV75_4198Not AvailablePositive4194196 - 419561751430.2
type vi secretion system protein implCLV75_4199Not AvailablePositive4195614 - 4199186131438.0
type vi secretion system protein impmCLV75_4200Not AvailablePositive4199186 - 419987224729.1
protein phosphatase/serine/threonine-protein phosphatase stp1CLV75_4201Not AvailablePositive4199869 - 420059125864.0
serine/threonine protein kinaseCLV75_4202Not AvailableNegative4200650 - 420285178226.1
outer membrane protein ompa-like peptidoglycan-associated proteinCLV75_4203Not AvailableNegative4202890 - 420346520643.2
d-alanyl-d-alanine carboxypeptidase-like proteinCLV75_4204Not AvailablePositive4203632 - 420447130935.9

Displaying genes 4121 – 4130 of 4412 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.