Ruegeria conchae str. DSM 29317

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria conchae str. DSM 29317 is a Gram-negative, non-motile rod-shaped bacterium that resides in the intestines of its host, the shrimp species Penaeus vannamei. This organism is classified as aerobic, indicating that it requires oxygen for growth and metabolic processes. Its optimal growth temperature is 29°C, placing it within the mesophilic temperature range, which is conducive to its life in the warm aquatic environments inhabited by its host. Ruegeria conchae str. DSM 29317 has a single replicon, suggesting a streamlined genomic organization. The strain is cataloged under the accession number RCCT00000000.1, which serves as a reference for researchers interested in studying its genetic and functional characteristics. The association of Ruegeria conchae with Penaeus vannamei highlights its potential role in the gut microbiome of marine organisms. Such interactions may be crucial for the host's health, contributing to nutrient absorption and overall digestive efficiency. Additionally, understanding the microbial communities in the intestines of marine species can provide insights into their ecological adaptations and health maintenance, particularly in the context of aquaculture where shrimp farming is economically significant.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria conchae
StrainDSM 29317

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatIntestines
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria conchae strain DSM 29317 Ga0181028_117, whole genome

Gene Summary

Adenine Count

997434 bp

Thymine Count

996553 bp

Guanine Count

1264325 bp

Cytosine Count

1246353 bp

Genome Length

4504665 bp

Protein-coding Genes

4343 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hpt domain-containing proteinCLV75_3053Not AvailableNegative3068008 - 306835812832.1
sigma-b regulation protein rsbu (phosphoserine phosphatase)CLV75_3054Not AvailablePositive3068480 - 306975446975.2
8-oxo-dgtp diphosphataseCLV75_3055Not AvailableNegative3069751 - 307019416757.1
molecular chaperone hsp33CLV75_3056Not AvailablePositive3070271 - 307125735517.7
8-oxo-dgtp pyrophosphatase mutt (nudix family)CLV75_3057Not AvailablePositive3071247 - 307184621710.9
poly(a) polymeraseCLV75_3058Not AvailablePositive3071843 - 307299741877.9
atp-binding cassette subfamily b multidrug efflux pumpCLV75_3059Not AvailablePositive3073192 - 307503067504.2
atp-binding cassette subfamily b proteinCLV75_3060Not AvailablePositive3075027 - 307685965767.8
23s rrna m(5)u-1939 methyltransferaseCLV75_3061Not AvailablePositive3076899 - 307812243938.8
voltage-gated sodium channelCLV75_3062Not AvailablePositive3078145 - 307893029291.9

Displaying genes 3001 – 3010 of 4412 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.