Ruegeria conchae str. DSM 29317

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria conchae str. DSM 29317 is a Gram-negative, non-motile rod-shaped bacterium that resides in the intestines of its host, the shrimp species Penaeus vannamei. This organism is classified as aerobic, indicating that it requires oxygen for growth and metabolic processes. Its optimal growth temperature is 29°C, placing it within the mesophilic temperature range, which is conducive to its life in the warm aquatic environments inhabited by its host. Ruegeria conchae str. DSM 29317 has a single replicon, suggesting a streamlined genomic organization. The strain is cataloged under the accession number RCCT00000000.1, which serves as a reference for researchers interested in studying its genetic and functional characteristics. The association of Ruegeria conchae with Penaeus vannamei highlights its potential role in the gut microbiome of marine organisms. Such interactions may be crucial for the host's health, contributing to nutrient absorption and overall digestive efficiency. Additionally, understanding the microbial communities in the intestines of marine species can provide insights into their ecological adaptations and health maintenance, particularly in the context of aquaculture where shrimp farming is economically significant.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria conchae
StrainDSM 29317

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatIntestines
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria conchae strain DSM 29317 Ga0181028_117, whole genome

Gene Summary

Adenine Count

997434 bp

Thymine Count

996553 bp

Guanine Count

1264325 bp

Cytosine Count

1246353 bp

Genome Length

4504665 bp

Protein-coding Genes

4343 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tripartite atp-independent transporter dctm subunitCLV75_2722Not AvailableNegative2739542 - 274085547384.8
trap-type c4-dicarboxylate transport system permease small subunitCLV75_2723Not AvailableNegative2740860 - 274150723677.9
trap-type c4-dicarboxylate transport system substrate-binding proteinCLV75_2724Not AvailableNegative2741464 - 274243834878.0
d-amino-acid dehydrogenaseCLV75_2725Not AvailableNegative2742491 - 274374144743.0
muconate cycloisomeraseCLV75_2726Not AvailableNegative2743738 - 274487140647.7
lysr family transcriptional regulatorCLV75_2727Not AvailablePositive2744969 - 274588934062.9
acetolactate synthase large subunitCLV75_2728Not AvailableNegative2745850 - 274754459475.6
gntr family transcriptional regulatorCLV75_2729Not AvailablePositive2747648 - 274835226531.9
hypothetical proteinCLV75_2730Not AvailablePositive2748349 - 274906225284.5
5-carboxymethyl-2-hydroxymuconate isomeraseCLV75_2731Not AvailablePositive2749202 - 274960014618.4

Displaying genes 2681 – 2690 of 4412 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.