Ruegeria conchae str. DSM 29317

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria conchae str. DSM 29317 is a Gram-negative, non-motile rod-shaped bacterium that resides in the intestines of its host, the shrimp species Penaeus vannamei. This organism is classified as aerobic, indicating that it requires oxygen for growth and metabolic processes. Its optimal growth temperature is 29°C, placing it within the mesophilic temperature range, which is conducive to its life in the warm aquatic environments inhabited by its host. Ruegeria conchae str. DSM 29317 has a single replicon, suggesting a streamlined genomic organization. The strain is cataloged under the accession number RCCT00000000.1, which serves as a reference for researchers interested in studying its genetic and functional characteristics. The association of Ruegeria conchae with Penaeus vannamei highlights its potential role in the gut microbiome of marine organisms. Such interactions may be crucial for the host's health, contributing to nutrient absorption and overall digestive efficiency. Additionally, understanding the microbial communities in the intestines of marine species can provide insights into their ecological adaptations and health maintenance, particularly in the context of aquaculture where shrimp farming is economically significant.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria conchae
StrainDSM 29317

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatIntestines
Biotic relationshipNot Available
Host(s)Penaeus vannamei
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Ruegeria conchae strain DSM 29317 Ga0181028_117, whole genome

Gene Summary

Adenine Count

997434 bp

Thymine Count

996553 bp

Guanine Count

1264325 bp

Cytosine Count

1246353 bp

Genome Length

4504665 bp

Protein-coding Genes

4343 genes

Non-Coding Genes

69 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
3-isopropylmalate/(r)-2-methylmalate dehydratase large subunitCLV75_1523Not AvailablePositive1494917 - 149631149625.9
3-isopropylmalate/(r)-2-methylmalate dehydratase small subunitCLV75_1524Not AvailablePositive1496313 - 149691822315.5
dna-binding transcriptional lysr family regulatorCLV75_1525Not AvailablePositive1496934 - 149784533565.2
lysr family nitrogen assimilation transcriptional regulatorCLV75_1526Not AvailableNegative1498011 - 149893433784.6
crotonobetainyl-coa:carnitine coa-transferase caib-like acyl-coa transferaseCLV75_1527Not AvailablePositive1499033 - 150022643299.1
hydroxymethylglutaryl-coa lyaseCLV75_1528Not AvailablePositive1500223 - 150116733400.9
c4-dicarboxylate-binding protein dctpCLV75_1529Not AvailablePositive1501196 - 150219435352.7
trap-type c4-dicarboxylate transport system permease small subunitCLV75_1530Not AvailablePositive1502196 - 150272619195.1
c4-dicarboxylate transporter dctm subunitCLV75_1531Not AvailablePositive1502723 - 150400944880.4
nad+ dependent glucose-6-phosphate dehydrogenase/l-arabinose 1-dehydrogenaseCLV75_1532Not AvailableNegative1504265 - 150507429745.3

Displaying genes 1511 – 1520 of 4412 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.