Vibrio sinaloensis DSM 21326 str. DSMZ 21326

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Vibrionales

Family

Vibrionaceae

Genus

Vibrio

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio sinaloensis
StrainDSM 21326 DSMZ 21326

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Vibrio sinaloensis DSM 21326 str. DSMZ 21326
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Vibrio sinaloensis DSM 21326 VISI1226_98, whole genome shotgun

Gene Summary

Adenine Count

1317433 bp

Thymine Count

1342004 bp

Guanine Count

1142881 bp

Cytosine Count

1102588 bp

Genome Length

4904906 bp

Protein-coding Genes

4590 genes

Non-Coding Genes

65 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Virion proteinVISI1226_20630Not AvailablePositive93549 - 9407919487.3
hypothetical proteinVISI1226_20635Not AvailablePositive94076 - 941743502.61
hypothetical proteinVISI1226_20640Not AvailablePositive94171 - 943807102.62
hypothetical proteinVISI1226_20645Not AvailablePositive94380 - 945325567.92
putative rlfb protein, possibly associated with lytic replicationVISI1226_20650Not AvailableNegative94700 - 9524221650.5
RlfaVISI1226_20655Not AvailableNegative95236 - 9587724983.8
Trna-trp;Not AvailableNot AvailablePositive95709 - 95785Not Available
Site-specific integraseVISI1226_20660Not AvailableNegative96005 - 9707841170.9
AttrNot AvailableNot AvailablePositive97183 - 97232Not Available
ribosome maturation protein rimpVISI1226_22692Q87M00Positive1 - 42515367.2

Displaying genes 21 – 30 of 4655 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

218 records
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Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm0000272(E)-4-coumarateC9H7O3Chemical structure of (E)-4-coumarateNot available
Average163.1501Da
Monoisotopic163.0395191Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000399(S)-allantoinC4H6N4O3Chemical structure of (S)-allantoin97-59-6
Average158.1154Da
Monoisotopic158.0439901Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da

Displaying 1–10 of 218 metabolites

Health Effects

No health effects information available for this bacterium.