Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oprd family porin | CD58_RS04230 | Not Available | Negative | 1019765 - 1021180 | 51564.3 |
| metal abc transporter atp-binding protein | CD58_RS04235 | Not Available | Negative | 1021351 - 1022953 | 59743.1 |
| abc transporter substrate-binding protein | CD58_RS04240 | Not Available | Negative | 1023340 - 1024965 | 60618.2 |
| abc transporter substrate-binding protein | CD58_RS04245 | Not Available | Negative | 1025221 - 1026822 | 59336.3 |
| duf6124 family protein | CD58_RS04250 | Not Available | Positive | 1027799 - 1028191 | 14125.6 |
| simpl domain-containing protein | CD58_RS04255 | Not Available | Negative | 1028374 - 1029090 | 25659.8 |
| atp-binding protein | CD58_RS04260 | Not Available | Positive | 1029460 - 1030722 | 46677.8 |
| response regulator transcription factor | CD58_RS04265 | Not Available | Positive | 1030715 - 1031275 | 20528.7 |
| abc transporter atp-binding protein/permease | CD58_RS04270 | Not Available | Positive | 1031527 - 1033254 | 65537.5 |
| fadr/gntr family transcriptional regulator | CD58_RS04275 | Not Available | Positive | 1033531 - 1034277 | 27517.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
