Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease v subunit gamma | CD58_RS03400 | Not Available | Positive | 802664 - 806116 | 129398.0 |
| exodeoxyribonuclease v subunit beta | CD58_RS03405 | Not Available | Positive | 806113 - 809802 | 137093.0 |
| exodeoxyribonuclease v subunit alpha | CD58_RS03410 | Not Available | Positive | 809799 - 811889 | 76696.1 |
| yfir family protein | CD58_RS03415 | Not Available | Positive | 812029 - 812604 | 20695.9 |
| diguanylate cyclase domain-containing protein | CD58_RS03420 | Not Available | Positive | 812601 - 813869 | 45244.4 |
| ompa family protein | CD58_RS03425 | Not Available | Positive | 813873 - 814376 | 18041.6 |
| lysr family transcriptional regulator | CD58_RS03430 | Not Available | Negative | 814373 - 815320 | 35421.7 |
| coa-acylating methylmalonate-semialdehyde dehydrogenase | CD58_RS03435 | Not Available | Positive | 815460 - 816986 | 54006.3 |
| 3-hydroxyisobutyrate dehydrogenase | CD58_RS03440 | Not Available | Positive | 816997 - 817884 | 29846.0 |
| proline dehydrogenase family protein | CD58_RS03445 | Not Available | Positive | 818197 - 819159 | 35595.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
