Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2388 domain-containing protein | CD58_RS28175 | Not Available | Positive | 6520595 - 6520912 | 10858.9 |
| duf2388 domain-containing protein | CD58_RS28180 | Not Available | Positive | 6521019 - 6521327 | 11234.3 |
| duf2388 domain-containing protein | CD58_RS28185 | Not Available | Positive | 6521354 - 6521674 | 11298.4 |
| duf4105 domain-containing protein | CD58_RS28190 | Not Available | Positive | 6521671 - 6523632 | 73749.6 |
| hu family dna-binding protein | CD58_RS28195 | Not Available | Negative | 6523764 - 6524039 | 9840.89 |
| nad(p)/fad-dependent oxidoreductase | CD58_RS28200 | Not Available | Negative | 6524231 - 6525379 | 40410.2 |
| rubredoxin | CD58_RS28205 | Not Available | Negative | 6525421 - 6525588 | 6233.41 |
| chorismate--pyruvate lyase family protein | CD58_RS28210 | Not Available | Positive | 6525781 - 6526344 | 21343.4 |
| 4-hydroxybenzoate octaprenyltransferase | CD58_RS28215 | Not Available | Positive | 6526344 - 6527234 | 33033.8 |
| hypothetical protein | CD58_RS28220 | Not Available | Negative | 6527395 - 6527778 | 13864.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
