Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssf | CD58_RS28025 | Not Available | Positive | 6480647 - 6482506 | 69233.6 |
| type vi secretion system baseplate subunit tssg | CD58_RS28030 | Not Available | Positive | 6482470 - 6483519 | 39572.8 |
| type vi secretion system atpase tssh | CD58_RS28035 | Not Available | Positive | 6483512 - 6486202 | 98256.0 |
| type vi secretion system tip protein tssi/vgrg | CD58_RS28040 | Not Available | Positive | 6486371 - 6488308 | 72212.3 |
| dcrb-related protein | CD58_RS28045 | Not Available | Positive | 6488327 - 6488761 | 16055.3 |
| rhs repeat-associated core domain-containing protein | CD58_RS28050 | Not Available | Positive | 6488774 - 6493219 | 164298.0 |
| hypothetical protein | CD58_RS28055 | Not Available | Positive | 6493221 - 6493499 | 10555.7 |
| duf6124 family protein | CD58_RS28060 | Not Available | Positive | 6494009 - 6494371 | 13169.6 |
| class i sam-dependent methyltransferase | CD58_RS28065 | Not Available | Negative | 6494619 - 6495335 | 25385.0 |
| metal abc transporter atp-binding protein | CD58_RS28070 | Not Available | Negative | 6495447 - 6496295 | 31491.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
