Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system baseplate subunit tssk | CD58_RS27975 | Not Available | Negative | 6471529 - 6472863 | 48491.0 |
| type vi secretion system lipoprotein tssj | CD58_RS27980 | Not Available | Negative | 6472879 - 6473385 | 18214.7 |
| type vi secretion system-associated fha domain protein tagh | CD58_RS27985 | Not Available | Negative | 6473454 - 6474905 | 53193.3 |
| type vi secretion system protein tssa | CD58_RS27990 | Not Available | Positive | 6475322 - 6476359 | 37346.8 |
| type vi secretion system contractile sheath small subunit | CD58_RS27995 | Not Available | Positive | 6476441 - 6476956 | 18728.6 |
| type vi secretion system contractile sheath large subunit | CD58_RS28000 | Not Available | Positive | 6476971 - 6478467 | 55698.6 |
| hcp family type vi secretion system effector | CD58_RS28005 | Not Available | Positive | 6478688 - 6479176 | 17494.0 |
| type vi secretion system amidase effector protein tae4 | CD58_RS28010 | Not Available | Positive | 6479258 - 6479707 | 16624.7 |
| hypothetical protein | CD58_RS28015 | Not Available | Positive | 6479707 - 6480144 | 15889.1 |
| type vi secretion system baseplate subunit tsse | CD58_RS28020 | Not Available | Positive | 6480138 - 6480650 | 18662.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
