Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aaa family atpase | CD58_RS02015 | Not Available | Positive | 468534 - 470126 | 55035.4 |
| glutamate synthase large subunit | CD58_RS02020 | Not Available | Positive | 470477 - 474925 | 162249.0 |
| fad-dependent oxidoreductase | CD58_RS02025 | Not Available | Positive | 474959 - 476377 | 51937.2 |
| uroporphyrinogen decarboxylase | CD58_RS02030 | Not Available | Positive | 476629 - 477696 | 39009.1 |
| n-acetylglucosamine-binding protein gbpa | CD58_RS02035 | Not Available | Positive | 478035 - 479501 | 52404.3 |
| type ii secretion system protein n | CD58_RS02040 | Not Available | Positive | 479643 - 480170 | 18798.9 |
| type ii secretion system secretin gspd | CD58_RS02045 | Not Available | Positive | 480179 - 482104 | 69081.6 |
| type ii secretion system atpase gspe | CD58_RS02050 | Not Available | Positive | 482101 - 483573 | 53552.9 |
| type ii secretion system inner membrane protein gspf | CD58_RS02055 | Not Available | Positive | 483578 - 484786 | 43637.2 |
| type ii secretion system major pseudopilin gspg | CD58_RS02060 | Not Available | Positive | 484790 - 485236 | 16023.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
