Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| (2fe-2s)-binding protein | CD58_RS24680 | Not Available | Negative | 5756515 - 5757036 | 18638.4 |
| type ii toxin-antitoxin system rele/pare family toxin | CD58_RS24685 | Not Available | Positive | 5757240 - 5757518 | 11225.5 |
| higa family addiction module antitoxin | CD58_RS24690 | Not Available | Positive | 5757533 - 5757820 | 10646.0 |
| dj-1 family glyoxalase iii | CD58_RS24695 | Not Available | Negative | 5757827 - 5758393 | 19846.6 |
| duf4879 domain-containing protein | CD58_RS24700 | Not Available | Negative | 5758472 - 5758927 | 16309.5 |
| ncs2 family permease | CD58_RS24705 | Not Available | Positive | 5759132 - 5760427 | 44933.6 |
| trna (uridine(54)-c5)-methyltransferase trma | CD58_RS24710 | Not Available | Positive | 5760424 - 5761503 | 40722.4 |
| type ii 3-dehydroquinate dehydratase | CD58_RS24715 | Not Available | Positive | 5761774 - 5762214 | 15818.9 |
| shikimate dehydrogenase | CD58_RS24720 | Not Available | Positive | 5762214 - 5763071 | 30343.9 |
| tetr/acrr family transcriptional regulator | CD58_RS24725 | Not Available | Negative | 5763189 - 5763866 | 25969.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
