Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mannuronan 5-epimerase algg | CD58_RS23400 | Not Available | Positive | 5468768 - 5470357 | 58955.8 |
| alginate o-acetyltransferase | CD58_RS23405 | Not Available | Positive | 5470369 - 5471817 | 53557.4 |
| mannuronate-specific alginate lyase | CD58_RS23410 | Not Available | Positive | 5471841 - 5472965 | 42145.0 |
| mboat family o-acyltransferase | CD58_RS23415 | Not Available | Positive | 5473186 - 5474751 | 59001.0 |
| alginate o-acetyltransferase | CD58_RS23420 | Not Available | Positive | 5474763 - 5475938 | 43735.8 |
| alginate o-acetyltransferase algf | CD58_RS23425 | Not Available | Positive | 5475953 - 5476618 | 23300.8 |
| mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | CD58_RS23430 | Not Available | Positive | 5476836 - 5478287 | 53831.5 |
| rhs repeat domain-containing protein | CD58_RS23435 | Not Available | Negative | 5478411 - 5481191 | 103620.0 |
| hypothetical protein | CD58_RS23440 | Not Available | Positive | 5481363 - 5481827 | 17184.9 |
| sdr family oxidoreductase | CD58_RS23445 | Not Available | Positive | 5481862 - 5482686 | 28718.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
