Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclic pyranopterin monophosphate synthase moac | CD58_RS23355 | Not Available | Negative | 5456212 - 5456685 | 16782.6 |
| phoh family protein | CD58_RS23360 | Not Available | Negative | 5456949 - 5458343 | 51662.0 |
| hypothetical protein | CD58_RS31140 | Not Available | Negative | 5458430 - 5458675 | 8919.77 |
| polysaccharide deacetylase family protein | CD58_RS23365 | Not Available | Negative | 5458680 - 5459804 | 42766.5 |
| peroxide stress protein yaaa | CD58_RS23370 | Not Available | Positive | 5460090 - 5460869 | 29328.9 |
| nucleotide sugar dehydrogenase | CD58_RS23375 | Not Available | Positive | 5461680 - 5462996 | 47517.1 |
| mannuronan synthase | CD58_RS23380 | Not Available | Positive | 5463095 - 5464579 | 56048.9 |
| alginate biosynthesis protein alg44 | CD58_RS23385 | Not Available | Positive | 5464615 - 5465784 | 42022.7 |
| alginate biosynthesis tpr repeat lipoprotein algk | CD58_RS23390 | Not Available | Positive | 5465794 - 5467251 | 52920.9 |
| alginate export family protein | CD58_RS23395 | Not Available | Positive | 5467257 - 5468741 | 55019.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
