Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas brassicacearum |
| Strain | DF41 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Triticum aestivum, Solanum lycopersicum |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1314978 bp
Thymine Count
1310668 bp
Guanine Count
2010915 bp
Cytosine Count
2015833 bp
Genome Length
6652396 bp
Protein-coding Genes
5688 genes
Non-Coding Genes
147 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal abc transporter atp-binding protein | CD58_RS22855 | Not Available | Positive | 5331146 - 5335605 | 156442.0 |
| rhs repeat domain-containing protein | CD58_RS22860 | Not Available | Positive | 5335602 - 5338400 | 104165.0 |
| nel-type e3 ubiquitin ligase domain-containing protein | CD58_RS22865 | Not Available | Negative | 5338460 - 5341309 | 106341.0 |
| dermonecrotic toxin domain-containing protein | CD58_RS22870 | Not Available | Negative | 5341200 - 5343029 | 67396.5 |
| rhs repeat-associated core domain-containing protein | CD58_RS22875 | Not Available | Positive | 5343282 - 5346020 | 101193.0 |
| atp-binding protein | CD58_RS22880 | Not Available | Positive | 5346223 - 5347989 | 65420.6 |
| sigma-54-dependent transcriptional regulator | CD58_RS22885 | Not Available | Positive | 5347982 - 5349331 | 49774.1 |
| hypothetical protein | CD58_RS22890 | Not Available | Negative | 5349442 - 5349771 | 11632.2 |
| fimbrial protein tcfa | CD58_RS22895 | Not Available | Positive | 5350140 - 5350853 | 25641.8 |
| cs1 type fimbrial major subunit | CD58_RS22900 | Not Available | Positive | 5350944 - 5351441 | 17073.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
